Merge branch 'master' into master

.travis.yml

@@ -23,6 +23,13 @@ go:
 
 matrix:
   include:
+    - os: linux
+      dist: trusty
+      sudo: required
+      services:
+        - docker
+      env:
+        - ATOM_CHANNEL=stable
     # - os: linux
     #   dist: trusty
     #   sudo: require
@@ -78,7 +85,7 @@ before_install:
       git clone --depth=1 https://github.com/Linuxbrew/brew.git ~/.linuxbrew || true;
     fi
   # Update Homebrew
-  - brew update
+  # - brew update
   - brew tap homebrew/dupes
   - brew tap homebrew/versions
   # Ruby language support
@@ -87,7 +94,11 @@ before_install:
   - gem install htmlbeautifier
   - gem install puppet-lint
   # Sass language support
-  - gem install sass
+  - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then
+      gem install sass;
+    else
+      docker pull unibeautify/sass-convert;
+    fi
   # Python language support
   - if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then sudo chmod 777 -R /opt/python; fi
   - pip install --upgrade pip
@@ -96,10 +107,19 @@ before_install:
   # SQL language support
   - pip install --upgrade sqlparse
   # Java, C, C++, C#, Objective-C, D, Pawn, Vala
-  - brew install uncrustify
+  - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then
+      brew install uncrustify;
+    else
+      docker pull unibeautify/uncrustify;
+    fi
   # R
   - brew tap homebrew/science
-  - brew install r
+  - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then
+      brew install r;
+      rscript --version;
+    else
+      docker pull unibeautify/rscript;
+    fi
   # PHP
   - brew tap homebrew/homebrew-php
   - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then
@@ -122,11 +142,12 @@ before_install:
   # - stack install stylish-haskell
   # Elm
   - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then
-      curl -L -o /tmp/elm-format.tgz https://github.com/avh4/elm-format/releases/download/0.2.0-alpha/elm-format-0.2.0-alpha-mac-x64.tgz;
+      curl -L -o /tmp/elm-format.tgz
+      https://github.com/avh4/elm-format/releases/download/0.7.0-exp/elm-format-0.17-0.7.0-exp-mac-x64.tgz;
       tar xvzf /tmp/elm-format.tgz -C /usr/local/bin;
     fi
   - if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then
-      curl -L -o /tmp/elm-format.tgz https://github.com/avh4/elm-format/releases/download/0.2.0-alpha/elm-format-0.2.0-alpha-linux-x64.tgz;
+      curl -L -o /tmp/elm-format.tgz https://github.com/avh4/elm-format/releases/download/0.7.0-exp/elm-format-0.17-0.7.0-exp-linux-x64.tgz;
       tar xvzf /tmp/elm-format.tgz -C $HOME/.linuxbrew/bin;
     fi
   # OCaml

CHANGELOG.md

@@ -1,8 +1,11 @@
 # Next
-- Fix [#1652](https://github.com/Glavin001/atom-beautify/issues/1652) and [#1653](https://github.com/Glavin001/atom-beautify/issues/1653). Add `.rb` to temp files passed in to the `rubocop` executable so they are not excluded.
 - Fix [#1703](https://github.com/Glavin001/atom-beautify/issues/1703). Now Fortran 2003/2008 file extensions are available for Fortran beautifier.
 - ...
 
+# v0.30.0 (2017-06-17)
+- Close [#1687](https://github.com/Glavin001/atom-beautify/issues/1687). Introducing Executables with Docker support! Executables wrap any non-preinstalled application, check if it is installed, and provide additional configuration options, including Docker support! See [#1687](https://github.com/Glavin001/atom-beautify/issues/1687) for more information.
+- Fix [#1652](https://github.com/Glavin001/atom-beautify/issues/1652) and [#1653](https://github.com/Glavin001/atom-beautify/issues/1653). Add `.rb` to temp files passed in to the `rubocop` executable so they are not excluded.
+
 # v0.29.26 (2017-05-28)
 - Fix #116. Switch from setText to setTextViaDiff, preserve folds
 - Add more perl filetypes (#1603)

CODE_OF_CONDUCT.md

@@ -0,0 +1,46 @@
+# Contributor Covenant Code of Conduct
+
+## Our Pledge
+
+In the interest of fostering an open and welcoming environment, we as contributors and maintainers pledge to making participation in our project and our community a harassment-free experience for everyone, regardless of age, body size, disability, ethnicity, gender identity and expression, level of experience, nationality, personal appearance, race, religion, or sexual identity and orientation.
+
+## Our Standards
+
+Examples of behavior that contributes to creating a positive environment include:
+
+* Using welcoming and inclusive language
+* Being respectful of differing viewpoints and experiences
+* Gracefully accepting constructive criticism
+* Focusing on what is best for the community
+* Showing empathy towards other community members
+
+Examples of unacceptable behavior by participants include:
+
+* The use of sexualized language or imagery and unwelcome sexual attention or advances
+* Trolling, insulting/derogatory comments, and personal or political attacks
+* Public or private harassment
+* Publishing others' private information, such as a physical or electronic address, without explicit permission
+* Other conduct which could reasonably be considered inappropriate in a professional setting
+
+## Our Responsibilities
+
+Project maintainers are responsible for clarifying the standards of acceptable behavior and are expected to take appropriate and fair corrective action in response to any instances of unacceptable behavior.
+
+Project maintainers have the right and responsibility to remove, edit, or reject comments, commits, code, wiki edits, issues, and other contributions that are not aligned to this Code of Conduct, or to ban temporarily or permanently any contributor for other behaviors that they deem inappropriate, threatening, offensive, or harmful.
+
+## Scope
+
+This Code of Conduct applies both within project spaces and in public spaces when an individual is representing the project or its community. Examples of representing a project or community include using an official project e-mail address, posting via an official social media account, or acting as an appointed representative at an online or offline event. Representation of a project may be further defined and clarified by project maintainers.
+
+## Enforcement
+
+Instances of abusive, harassing, or otherwise unacceptable behavior may be reported by contacting the project team at glavin.wiechert@gmail.com. The project team will review and investigate all complaints, and will respond in a way that it deems appropriate to the circumstances. The project team is obligated to maintain confidentiality with regard to the reporter of an incident. Further details of specific enforcement policies may be posted separately.
+
+Project maintainers who do not follow or enforce the Code of Conduct in good faith may face temporary or permanent repercussions as determined by other members of the project's leadership.
+
+## Attribution
+
+This Code of Conduct is adapted from the [Contributor Covenant][homepage], version 1.4, available at [http://contributor-covenant.org/version/1/4][version]
+
+[homepage]: http://contributor-covenant.org
+[version]: http://contributor-covenant.org/version/1/4/

README-template.md

@@ -1,4 +1,5 @@
 # :lipstick: [{{package.name}}](https://github.com/Glavin001/atom-beautify)
+[![Greenkeeper badge](https://badges.greenkeeper.io/Glavin001/atom-beautify.svg)](https://greenkeeper.io/)
 [![GitHub issues](https://img.shields.io/github/issues/Glavin001/atom-beautify.svg?style=flat-square)](https://github.com/Glavin001/atom-beautify/issues)
 [![GitHub stars](https://img.shields.io/github/stars/Glavin001/atom-beautify.svg?style=flat-square)](https://github.com/Glavin001/atom-beautify/stargazers)
 [![Gitter](https://img.shields.io/gitter/room/Glavin001/atom-beautify.svg?style=flat-square)](https://gitter.im/Glavin001/atom-beautify)

README.md

@@ -1,4 +1,5 @@
 # :lipstick: [atom-beautify](https://github.com/Glavin001/atom-beautify)
+[![Greenkeeper badge](https://badges.greenkeeper.io/Glavin001/atom-beautify.svg)](https://greenkeeper.io/)
 [![GitHub issues](https://img.shields.io/github/issues/Glavin001/atom-beautify.svg?style=flat-square)](https://github.com/Glavin001/atom-beautify/issues)
 [![GitHub stars](https://img.shields.io/github/stars/Glavin001/atom-beautify.svg?style=flat-square)](https://github.com/Glavin001/atom-beautify/stargazers)
 [![Gitter](https://img.shields.io/gitter/room/Glavin001/atom-beautify.svg?style=flat-square)](https://gitter.im/Glavin001/atom-beautify)
@@ -67,53 +68,53 @@ See [`unibeautify` branch](../../tree/unibeautify) for work in progress and [Iss
 
 Some of the supported beautifiers are developed for Node.js and are automatically installed when Atom-Beautify is installed. However, other beautifiers are command-line interface (CLI) applications and require you to manually install them.
 
-| Beautifier | Is Pre-Installed? | Installation Instructions |
+| Beautifier | Preinstalled | [:whale: Docker](https://www.docker.com/) | Installation |
-| --- | --- | --- |
+| --- | --- | --- |--- |
-| align-yaml | :white_check_mark: | Nothing! |
+| align-yaml | :white_check_mark: | :ok_hand: Not necessary | :smiley: Nothing! |
-| autopep8 | :x: | Go to https://github.com/hhatto/autopep8 and follow the instructions. |
+| autopep8 | :warning: 2 executables | :warning: Only 1 of 2 executables | :whale: With [Docker](https://www.docker.com/):<br/>1. Install [autopep8 (`autopep8`)](https://github.com/hhatto/autopep8) with `docker pull unibeautify/autopep8`<br/><br/>:bookmark_tabs: Manually:<br/>1. Install [autopep8 (`autopep8`)](https://github.com/hhatto/autopep8) by following https://github.com/hhatto/autopep8#installation<br/>2. Install [isort (`isort`)](https://github.com/timothycrosley/isort) by following https://github.com/timothycrosley/isort#installing-isort<br/> |
-| beautysh | :x: | Go to https://github.com/bemeurer/beautysh and follow the instructions. |
+| beautysh | :warning: 1 executable | :white_check_mark: :100:% of executables | :whale: With [Docker](https://www.docker.com/):<br/>1. Install [beautysh (`beautysh`)](https://github.com/bemeurer/beautysh) with `docker pull unibeautify/beautysh`<br/><br/>:bookmark_tabs: Manually:<br/>1. Install [beautysh (`beautysh`)](https://github.com/bemeurer/beautysh) by following https://github.com/bemeurer/beautysh#installation<br/> |
-| clang-format | :x: | Go to https://clang.llvm.org/docs/ClangFormat.html and follow the instructions. |
+| clang-format | :warning: 1 executable | :white_check_mark: :100:% of executables | :whale: With [Docker](https://www.docker.com/):<br/>1. Install [ClangFormat (`clang-format`)](https://clang.llvm.org/docs/ClangFormat.html) with `docker pull unibeautify/clang-format`<br/><br/>:bookmark_tabs: Manually:<br/>1. Install [ClangFormat (`clang-format`)](https://clang.llvm.org/docs/ClangFormat.html) by following https://clang.llvm.org/docs/ClangFormat.html<br/> |
-| cljfmt | :white_check_mark: | Nothing! |
+| cljfmt | :white_check_mark: | :ok_hand: Not necessary | :smiley: Nothing! |
-| Coffee Formatter | :white_check_mark: | Nothing! |
+| Coffee Formatter | :white_check_mark: | :ok_hand: Not necessary | :smiley: Nothing! |
-| coffee-fmt | :white_check_mark: | Nothing! |
+| coffee-fmt | :white_check_mark: | :ok_hand: Not necessary | :smiley: Nothing! |
-| Crystal | :x: | Go to http://crystal-lang.org and follow the instructions. |
+| Crystal | :warning: 1 executable | :white_check_mark: :100:% of executables | :whale: With [Docker](https://www.docker.com/):<br/>1. Install [Crystal (`crystal`)](http://crystal-lang.org) with `docker pull unibeautify/crystal`<br/><br/>:bookmark_tabs: Manually:<br/>1. Install [Crystal (`crystal`)](http://crystal-lang.org) by following https://crystal-lang.org/docs/installation/<br/> |
-| CSScomb | :white_check_mark: | Nothing! |
+| CSScomb | :white_check_mark: | :ok_hand: Not necessary | :smiley: Nothing! |
-| dfmt | :x: | Go to https://github.com/Hackerpilot/dfmt and follow the instructions. |
+| dfmt | :warning: 1 executable | :x: No Docker support | :bookmark_tabs: Manually:<br/>1. Install [Dfmt (`dfmt`)](https://github.com/Hackerpilot/dfmt) by following https://github.com/dlang-community/dfmt#building<br/> |
-| elm-format | :x: | Go to https://github.com/avh4/elm-format and follow the instructions. |
+| elm-format | :warning: 1 executable | :white_check_mark: :100:% of executables | :whale: With [Docker](https://www.docker.com/):<br/>1. Install [elm-format (`elm-format`)](https://github.com/avh4/elm-format) with `docker pull unibeautify/elm-format`<br/><br/>:bookmark_tabs: Manually:<br/>1. Install [elm-format (`elm-format`)](https://github.com/avh4/elm-format) by following https://github.com/avh4/elm-format#installation-<br/> |
-| erl_tidy | :x: | Go to http://erlang.org/doc/man/erl_tidy.html and follow the instructions. |
+| erl_tidy | :warning: Manual installation | :construction: Not an executable | :page_facing_up: Go to http://erlang.org/doc/man/erl_tidy.html and follow the instructions. |
-| ESLint Fixer | :white_check_mark: | Nothing! |
+| ESLint Fixer | :white_check_mark: | :ok_hand: Not necessary | :smiley: Nothing! |
-| formatR | :x: | Go to https://github.com/yihui/formatR and follow the instructions. |
+| formatR | :warning: 1 executable | :white_check_mark: :100:% of executables | :whale: With [Docker](https://www.docker.com/):<br/>1. Install [Rscript (`rscript`)](https://github.com/yihui/formatR) with `docker pull unibeautify/rscript`<br/><br/>:bookmark_tabs: Manually:<br/>1. Install [Rscript (`rscript`)](https://github.com/yihui/formatR) by following https://github.com/yihui/formatR<br/> |
-| Fortran Beautifier | :x: | Go to https://www.gnu.org/software/emacs/ and follow the instructions. |
+| Fortran Beautifier | :warning: 1 executable | :x: No Docker support | :bookmark_tabs: Manually:<br/>1. Install [Emacs (`emacs`)](https://www.gnu.org/software/emacs/) by following https://www.gnu.org/software/emacs/<br/> |
-| Gherkin formatter | :white_check_mark: | Nothing! |
+| Gherkin formatter | :white_check_mark: | :ok_hand: Not necessary | :smiley: Nothing! |
-| gofmt | :x: | Go to https://golang.org/cmd/gofmt/ and follow the instructions. |
+| gofmt | :warning: Manual installation | :construction: Not an executable | :page_facing_up: Go to https://golang.org/cmd/gofmt/ and follow the instructions. |
-| hh_format | :x: | Go to http://hhvm.com/ and follow the instructions. |
+| hh_format | :warning: Manual installation | :construction: Not an executable | :page_facing_up: Go to http://hhvm.com/ and follow the instructions. |
-| HTML Beautifier | :x: | Go to https://github.com/threedaymonk/htmlbeautifier and follow the instructions. |
+| HTML Beautifier | :warning: Manual installation | :construction: Not an executable | :page_facing_up: Go to https://github.com/threedaymonk/htmlbeautifier and follow the instructions. |
-| JS Beautify | :white_check_mark: | Nothing! |
+| JS Beautify | :white_check_mark: | :ok_hand: Not necessary | :smiley: Nothing! |
-| JSCS Fixer | :white_check_mark: | Nothing! |
+| JSCS Fixer | :white_check_mark: | :ok_hand: Not necessary | :smiley: Nothing! |
-| Latex Beautify | :x: | Go to https://github.com/cmhughes/latexindent.pl and follow the instructions. |
+| Latex Beautify | :warning: Manual installation | :construction: Not an executable | :page_facing_up: Go to https://github.com/cmhughes/latexindent.pl and follow the instructions. |
-| Lua beautifier | :x: | Go to https://www.perl.org/ and follow the instructions. |
+| Lua beautifier | :white_check_mark: | :ok_hand: Not necessary | :smiley: Nothing! |
-| Marko Beautifier | :white_check_mark: | Nothing! |
+| Marko Beautifier | :white_check_mark: | :ok_hand: Not necessary | :smiley: Nothing! |
-| Nginx Beautify | :white_check_mark: | Nothing! |
+| Nginx Beautify | :white_check_mark: | :ok_hand: Not necessary | :smiley: Nothing! |
-| ocp-indent | :x: | Go to https://www.typerex.org/ocp-indent.html and follow the instructions. |
+| ocp-indent | :warning: Manual installation | :construction: Not an executable | :page_facing_up: Go to https://www.typerex.org/ocp-indent.html and follow the instructions. |
-| Perltidy | :x: | Go to http://perltidy.sourceforge.net/ and follow the instructions. |
+| Perltidy | :warning: Manual installation | :construction: Not an executable | :page_facing_up: Go to http://perltidy.sourceforge.net/ and follow the instructions. |
-| PHP-CS-Fixer | :x: | Go to https://github.com/FriendsOfPHP/PHP-CS-Fixer and follow the instructions. |
+| PHP-CS-Fixer | :warning: 2 executables | :warning: Only 1 of 2 executables | :whale: With [Docker](https://www.docker.com/):<br/>1. Install [PHP-CS-Fixer (`php-cs-fixer`)](https://github.com/FriendsOfPHP/PHP-CS-Fixer) with `docker pull unibeautify/php-cs-fixer`<br/><br/>:bookmark_tabs: Manually:<br/>1. Install [PHP (`php`)](http://php.net/) by following http://php.net/manual/en/install.php<br/>2. Install [PHP-CS-Fixer (`php-cs-fixer`)](https://github.com/FriendsOfPHP/PHP-CS-Fixer) by following https://github.com/FriendsOfPHP/PHP-CS-Fixer#installation<br/> |
-| PHPCBF | :x: | Go to http://php.net/manual/en/install.php and follow the instructions. |
+| PHPCBF | :warning: 1 executable | :white_check_mark: :100:% of executables | :whale: With [Docker](https://www.docker.com/):<br/>1. Install [PHPCBF (`phpcbf`)](https://github.com/squizlabs/PHP_CodeSniffer) with `docker pull unibeautify/phpcbf`<br/><br/>:bookmark_tabs: Manually:<br/>1. Install [PHPCBF (`phpcbf`)](https://github.com/squizlabs/PHP_CodeSniffer) by following https://github.com/squizlabs/PHP_CodeSniffer#installation<br/> |
-| Pretty Diff | :white_check_mark: | Nothing! |
+| Pretty Diff | :white_check_mark: | :ok_hand: Not necessary | :smiley: Nothing! |
-| Pug Beautify | :white_check_mark: | Nothing! |
+| Pug Beautify | :white_check_mark: | :ok_hand: Not necessary | :smiley: Nothing! |
-| puppet-lint | :x: | Go to http://puppet-lint.com/ and follow the instructions. |
+| puppet-lint | :warning: Manual installation | :construction: Not an executable | :page_facing_up: Go to http://puppet-lint.com/ and follow the instructions. |
-| pybeautifier | :x: | Go to https://github.com/guyskk/pybeautifier and follow the instructions. |
+| pybeautifier | :warning: Manual installation | :construction: Not an executable | :page_facing_up: Go to https://github.com/guyskk/pybeautifier and follow the instructions. |
-| Remark | :white_check_mark: | Nothing! |
+| Remark | :white_check_mark: | :ok_hand: Not necessary | :smiley: Nothing! |
-| Rubocop | :x: | Go to https://github.com/bbatsov/rubocop and follow the instructions. |
+| Rubocop | :warning: Manual installation | :construction: Not an executable | :page_facing_up: Go to https://github.com/bbatsov/rubocop and follow the instructions. |
-| Ruby Beautify | :x: | Go to https://github.com/erniebrodeur/ruby-beautify and follow the instructions. |
+| Ruby Beautify | :warning: Manual installation | :construction: Not an executable | :page_facing_up: Go to https://github.com/erniebrodeur/ruby-beautify and follow the instructions. |
-| rustfmt | :x: | Go to https://github.com/nrc/rustfmt and follow the instructions. |
+| rustfmt | :warning: Manual installation | :construction: Not an executable | :page_facing_up: Go to https://github.com/nrc/rustfmt and follow the instructions. |
-| SassConvert | :x: | Go to http://sass-lang.com/documentation/file.SASS_REFERENCE.html#syntax and follow the instructions. |
+| SassConvert | :warning: 1 executable | :white_check_mark: :100:% of executables | :whale: With [Docker](https://www.docker.com/):<br/>1. Install [SassConvert (`sass-convert`)](http://sass-lang.com/documentation/file.SASS_REFERENCE.html#syntax) with `docker pull unibeautify/sass-convert`<br/><br/>:bookmark_tabs: Manually:<br/>1. Install [SassConvert (`sass-convert`)](http://sass-lang.com/documentation/file.SASS_REFERENCE.html#syntax) by following http://sass-lang.com/documentation/file.SASS_REFERENCE.html#syntax<br/> |
-| sqlformat | :x: | Go to https://github.com/andialbrecht/sqlparse and follow the instructions. |
+| sqlformat | :warning: Manual installation | :construction: Not an executable | :page_facing_up: Go to https://github.com/andialbrecht/sqlparse and follow the instructions. |
-| stylish-haskell | :x: | Go to https://github.com/jaspervdj/stylish-haskell and follow the instructions. |
+| stylish-haskell | :warning: Manual installation | :construction: Not an executable | :page_facing_up: Go to https://github.com/jaspervdj/stylish-haskell and follow the instructions. |
-| Tidy Markdown | :white_check_mark: | Nothing! |
+| Tidy Markdown | :white_check_mark: | :ok_hand: Not necessary | :smiley: Nothing! |
-| TypeScript Formatter | :white_check_mark: | Nothing! |
+| TypeScript Formatter | :white_check_mark: | :ok_hand: Not necessary | :smiley: Nothing! |
-| Uncrustify | :x: | Go to https://github.com/uncrustify/uncrustify and follow the instructions. |
+| Uncrustify | :warning: 1 executable | :white_check_mark: :100:% of executables | :whale: With [Docker](https://www.docker.com/):<br/>1. Install [Uncrustify (`uncrustify`)](http://uncrustify.sourceforge.net/) with `docker pull unibeautify/uncrustify`<br/><br/>:bookmark_tabs: Manually:<br/>1. Install [Uncrustify (`uncrustify`)](http://uncrustify.sourceforge.net/) by following https://github.com/uncrustify/uncrustify<br/> |
-| Vue Beautifier | :white_check_mark: | Nothing! |
+| Vue Beautifier | :white_check_mark: | :ok_hand: Not necessary | :smiley: Nothing! |
-| yapf | :x: | Go to https://github.com/google/yapf and follow the instructions. |
+| yapf | :warning: Manual installation | :construction: Not an executable | :page_facing_up: Go to https://github.com/google/yapf and follow the instructions. |
 
 ## Language Support
 
@@ -121,71 +122,71 @@ See [all supported options in the documentation at  `docs/options.md`](docs/opti
 
 | Language | Grammars | File Extensions | Supported Beautifiers |
 | --- | --- | --- | ---- |
-| Apex | `Apex` |`.cls`, `.trigger` | [`Uncrustify`](https://github.com/uncrustify/uncrustify) (Default) |
+| Apex | `Apex` |`.cls`, `.trigger` | **[`Uncrustify`](https://github.com/uncrustify/uncrustify)** |
-| Arduino | `Arduino` |`.ino`, `.pde` | [`Uncrustify`](https://github.com/uncrustify/uncrustify) (Default) |
+| Arduino | `Arduino` |`.ino`, `.pde` | **[`Uncrustify`](https://github.com/uncrustify/uncrustify)** |
-| Bash | `Shell Script` |`.bash`, `.sh` | [`beautysh`](https://github.com/bemeurer/beautysh) (Default) |
+| Bash | `Shell Script` |`.bash`, `.sh` | **[`beautysh`](https://github.com/bemeurer/beautysh)** |
-| C | `C`, `opencl` |`.h`, `.c`, `.cl` | [`Uncrustify`](https://github.com/uncrustify/uncrustify) (Default), [`clang-format`](https://clang.llvm.org/docs/ClangFormat.html) |
+| C | `C`, `opencl` |`.h`, `.c`, `.cl` | **[`Uncrustify`](https://github.com/uncrustify/uncrustify)**, [`clang-format`](https://clang.llvm.org/docs/ClangFormat.html) |
-| Coldfusion | `html` |`.cfm`, `.cfml`, `.cfc` | [`Pretty Diff`](https://github.com/prettydiff/prettydiff) (Default) |
+| Coldfusion | `html` |`.cfm`, `.cfml`, `.cfc` | **[`Pretty Diff`](https://github.com/prettydiff/prettydiff)** |
-| Clojure | `Clojure` |`.clj`, `.cljs`, `.edn` | [`cljfmt`](https://github.com/snoe/node-cljfmt) (Default) |
+| Clojure | `Clojure` |`.clj`, `.cljs`, `.edn` | **[`cljfmt`](https://github.com/snoe/node-cljfmt)** |
-| CoffeeScript | `CoffeeScript` |`.coffee` | [`Coffee Formatter`](https://github.com/Glavin001/Coffee-Formatter), [`coffee-fmt`](https://github.com/sterpe/coffee-fmt) (Default) |
+| CoffeeScript | `CoffeeScript` |`.coffee` | **[`coffee-fmt`](https://github.com/sterpe/coffee-fmt)**, [`Coffee Formatter`](https://github.com/Glavin001/Coffee-Formatter) |
-| C++ | `C++` |`.h`, `.hh`, `.cc`, `.cpp`, `.cxx`, `.C`, `.cu`, `.c++`, `.hpp`, `.hxx`, `.h++`, `.cuh` | [`Uncrustify`](https://github.com/uncrustify/uncrustify) (Default), [`clang-format`](https://clang.llvm.org/docs/ClangFormat.html) |
+| C++ | `C++` |`.h`, `.hh`, `.cc`, `.cpp`, `.cxx`, `.C`, `.cu`, `.c++`, `.hpp`, `.hxx`, `.h++`, `.cuh` | **[`Uncrustify`](https://github.com/uncrustify/uncrustify)**, [`clang-format`](https://clang.llvm.org/docs/ClangFormat.html) |
-| Crystal | `Crystal` |`.cr` | [`Crystal`](http://crystal-lang.org) (Default) |
+| Crystal | `Crystal` |`.cr` | **[`Crystal`](http://crystal-lang.org)** |
-| C# | `C#` |`.cs` | [`Uncrustify`](https://github.com/uncrustify/uncrustify) (Default) |
+| C# | `C#` |`.cs` | **[`Uncrustify`](https://github.com/uncrustify/uncrustify)** |
-| CSS | `CSS` |`.css` | [`CSScomb`](https://github.com/csscomb/csscomb.js), [`JS Beautify`](https://github.com/beautify-web/js-beautify) (Default), [`Pretty Diff`](https://github.com/prettydiff/prettydiff), [`SassConvert`](http://sass-lang.com/documentation/file.SASS_REFERENCE.html#syntax) |
+| CSS | `CSS` |`.css` | **[`JS Beautify`](https://github.com/beautify-web/js-beautify)**, [`CSScomb`](https://github.com/csscomb/csscomb.js), [`Pretty Diff`](https://github.com/prettydiff/prettydiff), [`SassConvert`](http://sass-lang.com/documentation/file.SASS_REFERENCE.html#syntax) |
-| CSV | `CSV` |`.csv` | [`Pretty Diff`](https://github.com/prettydiff/prettydiff) (Default) |
+| CSV | `CSV` |`.csv` | **[`Pretty Diff`](https://github.com/prettydiff/prettydiff)** |
-| D | `D` |`.d` | [`Uncrustify`](https://github.com/uncrustify/uncrustify) (Default), [`dfmt`](https://github.com/Hackerpilot/dfmt) |
+| D | `D` |`.d` | **[`Uncrustify`](https://github.com/uncrustify/uncrustify)**, [`dfmt`](https://github.com/Hackerpilot/dfmt) |
-| EJS | `EJS`, `JavaScript Template`, `HTML (Angular)` |`.ejs` | [`JS Beautify`](https://github.com/beautify-web/js-beautify) (Default), [`Pretty Diff`](https://github.com/prettydiff/prettydiff) |
+| EJS | `EJS`, `JavaScript Template`, `HTML (Angular)` |`.ejs` | **[`JS Beautify`](https://github.com/beautify-web/js-beautify)**, [`Pretty Diff`](https://github.com/prettydiff/prettydiff) |
-| Elm | `Elm` |`.elm` | [`elm-format`](https://github.com/avh4/elm-format) (Default) |
+| Elm | `Elm` |`.elm` | **[`elm-format`](https://github.com/avh4/elm-format)** |
-| ERB | `HTML (Ruby - ERB)`, `HTML (Rails)` |`.erb` | [`HTML Beautifier`](https://github.com/threedaymonk/htmlbeautifier), [`Pretty Diff`](https://github.com/prettydiff/prettydiff) (Default) |
+| ERB | `HTML (Ruby - ERB)`, `HTML (Rails)` |`.erb` | **[`Pretty Diff`](https://github.com/prettydiff/prettydiff)**, [`HTML Beautifier`](https://github.com/threedaymonk/htmlbeautifier) |
-| Erlang | `Erlang` |`.erl` | [`erl_tidy`](http://erlang.org/doc/man/erl_tidy.html) (Default) |
+| Erlang | `Erlang` |`.erl` | **[`erl_tidy`](http://erlang.org/doc/man/erl_tidy.html)** |
-| Fortran | `Fortran - Modern` |`.f90`, `.F90`, `.f95`, `.F95` | [`Fortran Beautifier`](https://www.gnu.org/software/emacs/) (Default) |
+| Fortran | `Fortran - Modern` |`.f90`, `.F90`, `.f95`, `.F95` | **[`Fortran Beautifier`](https://www.gnu.org/software/emacs/)** |
-| gherkin | `Gherkin` |`.feature` | [`Gherkin formatter`](https://github.com/Glavin001/atom-beautify/blob/master/src/beautifiers/gherkin.coffee) (Default) |
+| gherkin | `Gherkin` |`.feature` | **[`Gherkin formatter`](https://github.com/Glavin001/atom-beautify/blob/master/src/beautifiers/gherkin.coffee)** |
-| GLSL | `C`, `opencl`, `GLSL` |`.vert`, `.frag` | [`clang-format`](https://clang.llvm.org/docs/ClangFormat.html) (Default) |
+| GLSL | `C`, `opencl`, `GLSL` |`.vert`, `.frag` | **[`clang-format`](https://clang.llvm.org/docs/ClangFormat.html)** |
-| Go | `Go` |`.go` | [`gofmt`](https://golang.org/cmd/gofmt/) (Default) |
+| Go | `Go` |`.go` | **[`gofmt`](https://golang.org/cmd/gofmt/)** |
-| Golang Template | `HTML (Go)`, `Go Template` |`.gohtml` | [`Pretty Diff`](https://github.com/prettydiff/prettydiff) (Default) |
+| Golang Template | `HTML (Go)`, `Go Template` |`.gohtml` | **[`Pretty Diff`](https://github.com/prettydiff/prettydiff)** |
-| Handlebars | `Handlebars`, `HTML (Handlebars)` |`.hbs`, `.handlebars` | [`JS Beautify`](https://github.com/beautify-web/js-beautify) (Default), [`Pretty Diff`](https://github.com/prettydiff/prettydiff) |
+| Handlebars | `Handlebars`, `HTML (Handlebars)` |`.hbs`, `.handlebars` | **[`JS Beautify`](https://github.com/beautify-web/js-beautify)**, [`Pretty Diff`](https://github.com/prettydiff/prettydiff) |
-| Haskell | `Haskell` |`.hs` | [`stylish-haskell`](https://github.com/jaspervdj/stylish-haskell) (Default) |
+| Haskell | `Haskell` |`.hs` | **[`stylish-haskell`](https://github.com/jaspervdj/stylish-haskell)** |
-| HTML | `HTML` |`.html` | [`JS Beautify`](https://github.com/beautify-web/js-beautify) (Default), [`Pretty Diff`](https://github.com/prettydiff/prettydiff) |
+| HTML | `HTML` |`.html` | **[`JS Beautify`](https://github.com/beautify-web/js-beautify)**, [`Pretty Diff`](https://github.com/prettydiff/prettydiff) |
-| Jade | `Jade`, `Pug` |`.jade`, `.pug` | [`Pug Beautify`](https://github.com/vingorius/pug-beautify) (Default) |
+| Jade | `Jade`, `Pug` |`.jade`, `.pug` | **[`Pug Beautify`](https://github.com/vingorius/pug-beautify)** |
-| Java | `Java` |`.java` | [`Uncrustify`](https://github.com/uncrustify/uncrustify) (Default) |
+| Java | `Java` |`.java` | **[`Uncrustify`](https://github.com/uncrustify/uncrustify)** |
-| JavaScript | `JavaScript` |`.js` | [`ESLint Fixer`](https://github.com/eslint/eslint), [`JS Beautify`](https://github.com/beautify-web/js-beautify) (Default), [`JSCS Fixer`](https://github.com/jscs-dev/node-jscs/), [`Pretty Diff`](https://github.com/prettydiff/prettydiff) |
+| JavaScript | `JavaScript` |`.js` | **[`JS Beautify`](https://github.com/beautify-web/js-beautify)**, [`ESLint Fixer`](https://github.com/eslint/eslint), [`JSCS Fixer`](https://github.com/jscs-dev/node-jscs/), [`Pretty Diff`](https://github.com/prettydiff/prettydiff) |
-| JSON | `JSON` |`.json` | [`JS Beautify`](https://github.com/beautify-web/js-beautify) (Default), [`Pretty Diff`](https://github.com/prettydiff/prettydiff) |
+| JSON | `JSON` |`.json` | **[`JS Beautify`](https://github.com/beautify-web/js-beautify)**, [`Pretty Diff`](https://github.com/prettydiff/prettydiff) |
-| JSX | `JSX`, `JavaScript (JSX)`, `Babel ES6 JavaScript`, `JavaScript with JSX` |`.jsx`, `.js` | [`JS Beautify`](https://github.com/beautify-web/js-beautify), [`Pretty Diff`](https://github.com/prettydiff/prettydiff) (Default) |
+| JSX | `JSX`, `JavaScript (JSX)`, `Babel ES6 JavaScript`, `JavaScript with JSX` |`.jsx`, `.js` | **[`Pretty Diff`](https://github.com/prettydiff/prettydiff)**, [`JS Beautify`](https://github.com/beautify-web/js-beautify) |
-| LaTeX | `BibTeX`, `LaTeX`, `TeX` |`.bib`, `.tex`, `.sty`, `.cls`, `.dtx`, `.ins`, `.bbx`, `.cbx` | [`Latex Beautify`](https://github.com/cmhughes/latexindent.pl) (Default) |
+| LaTeX | `BibTeX`, `LaTeX`, `TeX` |`.bib`, `.tex`, `.sty`, `.cls`, `.dtx`, `.ins`, `.bbx`, `.cbx` | **[`Latex Beautify`](https://github.com/cmhughes/latexindent.pl)** |
-| LESS | `LESS` |`.less` | [`CSScomb`](https://github.com/csscomb/csscomb.js), [`Pretty Diff`](https://github.com/prettydiff/prettydiff) (Default) |
+| LESS | `LESS` |`.less` | **[`Pretty Diff`](https://github.com/prettydiff/prettydiff)**, [`CSScomb`](https://github.com/csscomb/csscomb.js) |
-| Lua | `Lua` |`.lua` | [`Lua beautifier`](https://www.perl.org/) (Default) |
+| Lua | `Lua` |`.lua` | **[`Lua beautifier`](https://github.com/Glavin001/atom-beautify/blob/master/src/beautifiers/lua-beautifier/beautifier.coffee)** |
-| Markdown | `GitHub Markdown` |`.markdown`, `.md` | [`Remark`](https://github.com/wooorm/remark), [`Tidy Markdown`](https://github.com/slang800/tidy-markdown) (Default) |
+| Markdown | `GitHub Markdown` |`.markdown`, `.md` | **[`Tidy Markdown`](https://github.com/slang800/tidy-markdown)**, [`Remark`](https://github.com/wooorm/remark) |
-| Marko | `Marko` |`.marko` | [`Marko Beautifier`](https://github.com/marko-js/marko-prettyprint) (Default) |
+| Marko | `Marko` |`.marko` | **[`Marko Beautifier`](https://github.com/marko-js/marko-prettyprint)** |
-| Mustache | `HTML (Mustache)` |`.mustache` | [`JS Beautify`](https://github.com/beautify-web/js-beautify) (Default), [`Pretty Diff`](https://github.com/prettydiff/prettydiff) |
+| Mustache | `HTML (Mustache)` |`.mustache` | **[`JS Beautify`](https://github.com/beautify-web/js-beautify)**, [`Pretty Diff`](https://github.com/prettydiff/prettydiff) |
-| Nginx | `nginx` |`.conf` | [`Nginx Beautify`](https://github.com/denysvitali/nginxbeautify) (Default) |
+| Nginx | `nginx` |`.conf` | **[`Nginx Beautify`](https://github.com/denysvitali/nginxbeautify)** |
-| Nunjucks | `Nunjucks`, `Nunjucks Templates`, `HTML (Nunjucks Templates)` |`.njk`, `.nunjucks` | [`Pretty Diff`](https://github.com/prettydiff/prettydiff) (Default) |
+| Nunjucks | `Nunjucks`, `Nunjucks Templates`, `HTML (Nunjucks Templates)` |`.njk`, `.nunjucks` | **[`Pretty Diff`](https://github.com/prettydiff/prettydiff)** |
-| Objective-C | `Objective-C`, `Objective-C++` |`.m`, `.mm`, `.h` | [`Uncrustify`](https://github.com/uncrustify/uncrustify) (Default), [`clang-format`](https://clang.llvm.org/docs/ClangFormat.html) |
+| Objective-C | `Objective-C`, `Objective-C++` |`.m`, `.mm`, `.h` | **[`Uncrustify`](https://github.com/uncrustify/uncrustify)**, [`clang-format`](https://clang.llvm.org/docs/ClangFormat.html) |
-| OCaml | `OCaml` |`.ml` | [`ocp-indent`](https://www.typerex.org/ocp-indent.html) (Default) |
+| OCaml | `OCaml` |`.ml` | **[`ocp-indent`](https://www.typerex.org/ocp-indent.html)** |
-| Pawn | `Pawn` | | [`Uncrustify`](https://github.com/uncrustify/uncrustify) (Default) |
+| Pawn | `Pawn` | | **[`Uncrustify`](https://github.com/uncrustify/uncrustify)** |
-| Perl | `Perl`, `Perl 6` |`.pl`, `.PL`, `.pm`, `.pod`, `.t` | [`Perltidy`](http://perltidy.sourceforge.net/) (Default) |
+| Perl | `Perl`, `Perl 6` |`.pl`, `.PL`, `.pm`, `.pod`, `.t` | **[`Perltidy`](http://perltidy.sourceforge.net/)** |
-| PHP | `PHP` |`.php`, `.module`, `.inc` | [`PHP-CS-Fixer`](https://github.com/FriendsOfPHP/PHP-CS-Fixer) (Default), [`PHPCBF`](http://php.net/manual/en/install.php), [`hh_format`](http://hhvm.com/) |
+| PHP | `PHP` |`.php`, `.module`, `.inc` | **[`PHP-CS-Fixer`](https://github.com/FriendsOfPHP/PHP-CS-Fixer)**, [`PHPCBF`](http://php.net/manual/en/install.php), [`hh_format`](http://hhvm.com/) |
-| Puppet | `Puppet` |`.pp` | [`puppet-lint`](http://puppet-lint.com/) (Default) |
+| Puppet | `Puppet` |`.pp` | **[`puppet-lint`](http://puppet-lint.com/)** |
-| Python | `Python` |`.py` | [`autopep8`](https://github.com/hhatto/autopep8) (Default), [`pybeautifier`](https://github.com/guyskk/pybeautifier), [`yapf`](https://github.com/google/yapf) |
+| Python | `Python` |`.py` | **[`autopep8`](https://github.com/hhatto/autopep8)**, [`pybeautifier`](https://github.com/guyskk/pybeautifier), [`yapf`](https://github.com/google/yapf) |
-| R | `R` |`.r`, `.R` | [`formatR`](https://github.com/yihui/formatR) (Default) |
+| R | `R` |`.r`, `.R` | **[`formatR`](https://github.com/yihui/formatR)** |
-| Riot.js | `Riot.js`, `HTML (Riot Tag)` |`.tag` | [`Pretty Diff`](https://github.com/prettydiff/prettydiff) (Default) |
+| Riot.js | `Riot.js`, `HTML (Riot Tag)` |`.tag` | **[`Pretty Diff`](https://github.com/prettydiff/prettydiff)** |
-| Ruby | `Ruby`, `Ruby on Rails` |`.rb` | [`Rubocop`](https://github.com/bbatsov/rubocop) (Default), [`Ruby Beautify`](https://github.com/erniebrodeur/ruby-beautify) |
+| Ruby | `Ruby`, `Ruby on Rails` |`.rb` | **[`Rubocop`](https://github.com/bbatsov/rubocop)**, [`Ruby Beautify`](https://github.com/erniebrodeur/ruby-beautify) |
-| Rust | `Rust` |`.rs`, `.rlib` | [`rustfmt`](https://github.com/nrc/rustfmt) (Default) |
+| Rust | `Rust` |`.rs`, `.rlib` | **[`rustfmt`](https://github.com/nrc/rustfmt)** |
-| Sass | `Sass` |`.sass` | [`SassConvert`](http://sass-lang.com/documentation/file.SASS_REFERENCE.html#syntax) (Default) |
+| Sass | `Sass` |`.sass` | **[`SassConvert`](http://sass-lang.com/documentation/file.SASS_REFERENCE.html#syntax)** |
-| SCSS | `SCSS` |`.scss` | [`CSScomb`](https://github.com/csscomb/csscomb.js), [`Pretty Diff`](https://github.com/prettydiff/prettydiff) (Default), [`SassConvert`](http://sass-lang.com/documentation/file.SASS_REFERENCE.html#syntax) |
+| SCSS | `SCSS` |`.scss` | **[`Pretty Diff`](https://github.com/prettydiff/prettydiff)**, [`CSScomb`](https://github.com/csscomb/csscomb.js), [`SassConvert`](http://sass-lang.com/documentation/file.SASS_REFERENCE.html#syntax) |
-| Spacebars | `Spacebars` | | [`Pretty Diff`](https://github.com/prettydiff/prettydiff) (Default) |
+| Spacebars | `Spacebars` | | **[`Pretty Diff`](https://github.com/prettydiff/prettydiff)** |
-| SQL | `SQL (Rails)`, `SQL` |`.sql` | [`sqlformat`](https://github.com/andialbrecht/sqlparse) (Default) |
+| SQL | `SQL (Rails)`, `SQL` |`.sql` | **[`sqlformat`](https://github.com/andialbrecht/sqlparse)** |
-| SVG | `SVG` |`.svg` | [`Pretty Diff`](https://github.com/prettydiff/prettydiff) (Default) |
+| SVG | `SVG` |`.svg` | **[`Pretty Diff`](https://github.com/prettydiff/prettydiff)** |
-| Swig | `HTML (Swig)`, `SWIG` |`.swig` | [`Pretty Diff`](https://github.com/prettydiff/prettydiff) (Default) |
+| Swig | `HTML (Swig)`, `SWIG` |`.swig` | **[`Pretty Diff`](https://github.com/prettydiff/prettydiff)** |
-| TSS | `TSS` |`.tss` | [`Pretty Diff`](https://github.com/prettydiff/prettydiff) (Default) |
+| TSS | `TSS` |`.tss` | **[`Pretty Diff`](https://github.com/prettydiff/prettydiff)** |
-| Twig | `HTML (Twig)` |`.twig` | [`Pretty Diff`](https://github.com/prettydiff/prettydiff) (Default) |
+| Twig | `HTML (Twig)` |`.twig` | **[`Pretty Diff`](https://github.com/prettydiff/prettydiff)** |
-| TypeScript | `TypeScript` |`.ts` | [`TypeScript Formatter`](https://github.com/vvakame/typescript-formatter) (Default) |
+| TypeScript | `TypeScript` |`.ts` | **[`TypeScript Formatter`](https://github.com/vvakame/typescript-formatter)** |
-| UX Markup | `UX` |`.ux` | [`Pretty Diff`](https://github.com/prettydiff/prettydiff) (Default) |
+| UX Markup | `UX` |`.ux` | **[`Pretty Diff`](https://github.com/prettydiff/prettydiff)** |
-| Vala | `Vala` |`.vala`, `.vapi` | [`Uncrustify`](https://github.com/uncrustify/uncrustify) (Default) |
+| Vala | `Vala` |`.vala`, `.vapi` | **[`Uncrustify`](https://github.com/uncrustify/uncrustify)** |
-| Visualforce | `Visualforce` |`.page` | [`Pretty Diff`](https://github.com/prettydiff/prettydiff) (Default) |
+| Visualforce | `Visualforce` |`.page` | **[`Pretty Diff`](https://github.com/prettydiff/prettydiff)** |
-| Vue | `Vue Component` |`.vue` | [`Vue Beautifier`](https://github.com/Glavin001/atom-beautify/blob/master/src/beautifiers/vue-beautifier.coffee) (Default) |
+| Vue | `Vue Component` |`.vue` | **[`Vue Beautifier`](https://github.com/Glavin001/atom-beautify/blob/master/src/beautifiers/vue-beautifier.coffee)** |
-| XML | `SLD`, `XML`, `XHTML`, `XSD`, `XSL`, `JSP`, `GSP` |`.sld`, `.xml`, `.xhtml`, `.xsd`, `.xsl`, `.jsp`, `.gsp`, `.plist`, `.recipe`, `.config` | [`JS Beautify`](https://github.com/beautify-web/js-beautify), [`Pretty Diff`](https://github.com/prettydiff/prettydiff) (Default) |
+| XML | `SLD`, `XML`, `XHTML`, `XSD`, `XSL`, `JSP`, `GSP` |`.sld`, `.xml`, `.xhtml`, `.xsd`, `.xsl`, `.jsp`, `.gsp`, `.plist`, `.recipe`, `.config` | **[`Pretty Diff`](https://github.com/prettydiff/prettydiff)**, [`JS Beautify`](https://github.com/beautify-web/js-beautify) |
-| XTemplate | `XTemplate` |`.xtemplate` | [`Pretty Diff`](https://github.com/prettydiff/prettydiff) (Default) |
+| XTemplate | `XTemplate` |`.xtemplate` | **[`Pretty Diff`](https://github.com/prettydiff/prettydiff)** |
-| YAML | `YAML` |`.yml`, `.yaml` | [`align-yaml`](https://github.com/jonschlinkert/align-yaml) (Default) |
+| YAML | `YAML` |`.yml`, `.yaml` | **[`align-yaml`](https://github.com/jonschlinkert/align-yaml)** |
 
 ## Usage
 

appveyor.yml

@@ -1,5 +1,5 @@
 version: "{build}"
-os: Windows Server 2012 R2
+image: Visual Studio 2017
 
 test: off
 deploy: off
@@ -46,9 +46,6 @@ install:
   - ECHO "Filesystem root:"
   - ps: "ls \"C:/\""
 
-  - ECHO "Installed SDKs:"
-  - ps: "ls \"C:/Program Files/Microsoft SDKs/Windows\""
-
   - cinst atom -y
   - cd %APPVEYOR_BUILD_FOLDER%
   # Add Atom's bin (apm, etc) to PATH
@@ -116,18 +113,22 @@ install:
   - where php-cs-fixer
 
   # Uncrustify
-  - curl -k -L http://sourceforge.net/projects/uncrustify/files/uncrustify/uncrustify-0.61/uncrustify-0.61.3-gf65394e-win32.zip/download -o uncrustify.zip
+  - curl -k -L https://sourceforge.net/projects/uncrustify/files/uncrustify/uncrustify-0.65/uncrustify-0.65-win32.zip/download -o uncrustify.zip
   - cinst 7zip.commandline -y
   - 7za e uncrustify.zip -ouncrustify-d
   - "SET PATH=%cd%\\uncrustify-d;%PATH%"
   - where uncrustify
 
   # elm-format
-  - curl -k -L https://github.com/avh4/elm-format/releases/download/0.2.0-alpha/elm-format-0.2.0-alpha-win-x64.zip -o elm-format.zip
+  - curl -k -L https://github.com/avh4/elm-format/releases/download/0.7.0-exp/elm-format-0.18-0.7.0-exp-win-i386.zip -o elm-format.zip
   - 7za e elm-format.zip -oelm-format-d
   - "SET PATH=%cd%\\elm-format-d;%PATH%"
   - where elm-format
 
+  # Beautysh
+  - pip install beautysh
+  - where beautysh
+
 build_script:
 
   - cd %APPVEYOR_BUILD_FOLDER%

docs/index.coffee

@@ -1,3 +1,4 @@
+
 #!/usr/bin/env coffee
 
 # Dependencies
@@ -11,7 +12,10 @@ pkg = require('../package.json')
 console.log('Generating options...')
 beautifier = new Beautifiers()
 languageOptions = beautifier.options
+executableOptions = languageOptions.executables
+delete languageOptions.executables
 packageOptions = require('../src/config.coffee')
+packageOptions.executables = executableOptions
 # Build options by Beautifier
 beautifiersMap = _.keyBy(beautifier.beautifiers, 'name')
 languagesMap = _.keyBy(beautifier.languages.languages, 'name')
@@ -82,10 +86,19 @@ Handlebars.registerHelper('example-config', (key, option, options) ->
 
 Handlebars.registerHelper('language-beautifiers-support', (languageOptions, options) ->
 
-  rows = _.map(languageOptions, (val, k) ->
+  rows = _.chain(languageOptions)
+    .filter((val, k) -> k isnt "executables")
+    .map((val, k) ->
       name = val.title
       defaultBeautifier = _.get(val, "properties.default_beautifier.default")
-    beautifiers = _.map(val.beautifiers, (b) ->
+      beautifiers = _.chain(val.beautifiers)
+        .sortBy()
+        .sortBy((b) ->
+          beautifier = beautifiersMap[b]
+          isDefault = b is defaultBeautifier
+          return !isDefault
+        )
+        .map((b) ->
           beautifier = beautifiersMap[b]
           isDefault = b is defaultBeautifier
           if beautifier.link
@@ -93,14 +106,16 @@ Handlebars.registerHelper('language-beautifiers-support', (languageOptions, opti
           else
             r = "`#{b}`"
           if isDefault
-        r += " (Default)"
+            r = "**#{r}**"
           return r
         )
+        .value()
       grammars = _.map(val.grammars, (b) -> "`#{b}`")
       extensions = _.map(val.extensions, (b) -> "`.#{b}`")
 
       return "| #{name} | #{grammars.join(', ')} |#{extensions.join(', ')} | #{beautifiers.join(', ')} |"
     )
+    .value()
   results = """
   | Language | Grammars | File Extensions | Supported Beautifiers |
   | --- | --- | --- | ---- |
@@ -148,7 +163,7 @@ Handlebars.registerHelper('language-options-support', (languageOptions, options)
 Handlebars.registerHelper('beautifiers-info', (beautifiers, options) ->
 
   ###
-  | Beautifier | Is Pre-Installed? | Installation Instructions |
+  | Beautifier | Preinstalled? | Installation Instructions |
   | --- | ---- |
   | Pretty Diff | :white_check_mark: | N/A |
   | AutoPEP8 | :x: | LINK |
@@ -157,13 +172,63 @@ Handlebars.registerHelper('beautifiers-info', (beautifiers, options) ->
   rows = _.map(beautifiers, (beautifier, k) ->
     name = beautifier.name
     isPreInstalled = beautifier.isPreInstalled
+    if typeof isPreInstalled is "function"
+      isPreInstalled = beautifier.isPreInstalled()
     link = beautifier.link
-    installationInstructions = if isPreInstalled then "Nothing!" else "Go to #{link} and follow the instructions."
+    executables = beautifier.executables or []
-    return "| #{name} | #{if isPreInstalled then ':white_check_mark:' else ':x:'} | #{installationInstructions} |"
+    hasExecutables = executables.length > 0
+    dockerExecutables = executables.filter((exe) -> !!exe.docker)
+    hasDockerExecutables = dockerExecutables.length > 0
+    installWithDocker = dockerExecutables.map((d) -> "- #{d.docker.image}").join('\n')
+
+    preinstalledCell = do (() ->
+      if isPreInstalled
+        ":white_check_mark:"
+      else
+        if executables.length > 0
+          ":warning: #{executables.length} executable#{if executables.length is 1 then '' else 's'}"
+        else
+          ":warning: Manual installation"
+    )
+    dockerCell = do (() ->
+      if isPreInstalled
+        ":ok_hand: Not necessary"
+      else
+        if hasExecutables
+          if dockerExecutables.length is executables.length
+            ":white_check_mark: :100:% of executables"
+          else if dockerExecutables.length > 0
+            ":warning: Only #{dockerExecutables.length} of #{executables.length} executables"
+          else
+            ":x: No Docker support"
+        else
+          ":construction: Not an executable"
+    )
+    installationInstructions = do (() ->
+      if isPreInstalled
+        ":smiley: Nothing!"
+      else
+        if hasExecutables
+          executablesInstallation = ""
+          if hasDockerExecutables
+            executablesInstallation += ":whale: With [Docker](https://www.docker.com/):<br/>"
+            dockerExecutables.forEach((e, i) ->
+              executablesInstallation += "#{i+1}. Install [#{e.name or e.cmd} (`#{e.cmd}`)](#{e.homepage}) with `docker pull #{e.docker.image}`<br/>"
+            )
+            executablesInstallation += "<br/>"
+          executablesInstallation += ":bookmark_tabs: Manually:<br/>"
+          executables.forEach((e, i) ->
+            executablesInstallation += "#{i+1}. Install [#{e.name or e.cmd} (`#{e.cmd}`)](#{e.homepage}) by following #{e.installation}<br/>"
+          )
+          return executablesInstallation
+        else
+          ":page_facing_up: Go to #{link} and follow the instructions."
+    )
+    return "| #{name} | #{preinstalledCell} | #{dockerCell} | #{installationInstructions} |"
   )
   results = """
-  | Beautifier | Is Pre-Installed? | Installation Instructions |
+  | Beautifier | Preinstalled | [:whale: Docker](https://www.docker.com/) | Installation |
-  | --- | --- | --- |
+  | --- | --- | --- |--- |
   #{rows.join('\n')}
   """
   return new Handlebars.SafeString(results)

docs/options.md

@@ -124,6 +124,250 @@ Show loading view when beautifying
 2. Go into *Packages* and search for "*Atom Beautify*" package.
 3. Find the option "*Show Loading View*" and change it to your desired configuration.
 
+####  [Executables](#executables) 
+
+**Description**:
+
+Configure executables used by beautifiers.
+
+#####  [autopep8](#autopep8) 
+
+**Important**: This option is only configurable from within Atom Beautify's setting panel.
+
+**Type**: `object`
+
+**Description**:
+
+Options for autopep8 executable.
+
+**How to Configure**
+
+1. You can open the [Settings View](https://github.com/atom/settings-view) by navigating to
+*Edit > Preferences (Linux)*, *Atom > Preferences (OS X)*, or *File > Preferences (Windows)*.
+2. Go into *Packages* and search for "*Atom Beautify*" package.
+3. Find the option "*autopep8*" and change it to your desired configuration.
+
+#####  [beautysh](#beautysh) 
+
+**Important**: This option is only configurable from within Atom Beautify's setting panel.
+
+**Type**: `object`
+
+**Description**:
+
+Options for beautysh executable.
+
+**How to Configure**
+
+1. You can open the [Settings View](https://github.com/atom/settings-view) by navigating to
+*Edit > Preferences (Linux)*, *Atom > Preferences (OS X)*, or *File > Preferences (Windows)*.
+2. Go into *Packages* and search for "*Atom Beautify*" package.
+3. Find the option "*beautysh*" and change it to your desired configuration.
+
+#####  [ClangFormat](#clangformat) 
+
+**Important**: This option is only configurable from within Atom Beautify's setting panel.
+
+**Type**: `object`
+
+**Description**:
+
+Options for ClangFormat executable.
+
+**How to Configure**
+
+1. You can open the [Settings View](https://github.com/atom/settings-view) by navigating to
+*Edit > Preferences (Linux)*, *Atom > Preferences (OS X)*, or *File > Preferences (Windows)*.
+2. Go into *Packages* and search for "*Atom Beautify*" package.
+3. Find the option "*ClangFormat*" and change it to your desired configuration.
+
+#####  [Crystal](#crystal) 
+
+**Important**: This option is only configurable from within Atom Beautify's setting panel.
+
+**Type**: `object`
+
+**Description**:
+
+Options for Crystal executable.
+
+**How to Configure**
+
+1. You can open the [Settings View](https://github.com/atom/settings-view) by navigating to
+*Edit > Preferences (Linux)*, *Atom > Preferences (OS X)*, or *File > Preferences (Windows)*.
+2. Go into *Packages* and search for "*Atom Beautify*" package.
+3. Find the option "*Crystal*" and change it to your desired configuration.
+
+#####  [Dfmt](#dfmt) 
+
+**Important**: This option is only configurable from within Atom Beautify's setting panel.
+
+**Type**: `object`
+
+**Description**:
+
+Options for Dfmt executable.
+
+**How to Configure**
+
+1. You can open the [Settings View](https://github.com/atom/settings-view) by navigating to
+*Edit > Preferences (Linux)*, *Atom > Preferences (OS X)*, or *File > Preferences (Windows)*.
+2. Go into *Packages* and search for "*Atom Beautify*" package.
+3. Find the option "*Dfmt*" and change it to your desired configuration.
+
+#####  [elm-format](#elm-format) 
+
+**Important**: This option is only configurable from within Atom Beautify's setting panel.
+
+**Type**: `object`
+
+**Description**:
+
+Options for elm-format executable.
+
+**How to Configure**
+
+1. You can open the [Settings View](https://github.com/atom/settings-view) by navigating to
+*Edit > Preferences (Linux)*, *Atom > Preferences (OS X)*, or *File > Preferences (Windows)*.
+2. Go into *Packages* and search for "*Atom Beautify*" package.
+3. Find the option "*elm-format*" and change it to your desired configuration.
+
+#####  [Emacs](#emacs) 
+
+**Important**: This option is only configurable from within Atom Beautify's setting panel.
+
+**Type**: `object`
+
+**Description**:
+
+Options for Emacs executable.
+
+**How to Configure**
+
+1. You can open the [Settings View](https://github.com/atom/settings-view) by navigating to
+*Edit > Preferences (Linux)*, *Atom > Preferences (OS X)*, or *File > Preferences (Windows)*.
+2. Go into *Packages* and search for "*Atom Beautify*" package.
+3. Find the option "*Emacs*" and change it to your desired configuration.
+
+#####  [isort](#isort) 
+
+**Important**: This option is only configurable from within Atom Beautify's setting panel.
+
+**Type**: `object`
+
+**Description**:
+
+Options for isort executable.
+
+**How to Configure**
+
+1. You can open the [Settings View](https://github.com/atom/settings-view) by navigating to
+*Edit > Preferences (Linux)*, *Atom > Preferences (OS X)*, or *File > Preferences (Windows)*.
+2. Go into *Packages* and search for "*Atom Beautify*" package.
+3. Find the option "*isort*" and change it to your desired configuration.
+
+#####  [PHP](#php) 
+
+**Important**: This option is only configurable from within Atom Beautify's setting panel.
+
+**Type**: `object`
+
+**Description**:
+
+Options for PHP executable.
+
+**How to Configure**
+
+1. You can open the [Settings View](https://github.com/atom/settings-view) by navigating to
+*Edit > Preferences (Linux)*, *Atom > Preferences (OS X)*, or *File > Preferences (Windows)*.
+2. Go into *Packages* and search for "*Atom Beautify*" package.
+3. Find the option "*PHP*" and change it to your desired configuration.
+
+#####  [PHP-CS-Fixer](#php-cs-fixer) 
+
+**Important**: This option is only configurable from within Atom Beautify's setting panel.
+
+**Type**: `object`
+
+**Description**:
+
+Options for PHP-CS-Fixer executable.
+
+**How to Configure**
+
+1. You can open the [Settings View](https://github.com/atom/settings-view) by navigating to
+*Edit > Preferences (Linux)*, *Atom > Preferences (OS X)*, or *File > Preferences (Windows)*.
+2. Go into *Packages* and search for "*Atom Beautify*" package.
+3. Find the option "*PHP-CS-Fixer*" and change it to your desired configuration.
+
+#####  [PHPCBF](#phpcbf) 
+
+**Important**: This option is only configurable from within Atom Beautify's setting panel.
+
+**Type**: `object`
+
+**Description**:
+
+Options for PHPCBF executable.
+
+**How to Configure**
+
+1. You can open the [Settings View](https://github.com/atom/settings-view) by navigating to
+*Edit > Preferences (Linux)*, *Atom > Preferences (OS X)*, or *File > Preferences (Windows)*.
+2. Go into *Packages* and search for "*Atom Beautify*" package.
+3. Find the option "*PHPCBF*" and change it to your desired configuration.
+
+#####  [Rscript](#rscript) 
+
+**Important**: This option is only configurable from within Atom Beautify's setting panel.
+
+**Type**: `object`
+
+**Description**:
+
+Options for Rscript executable.
+
+**How to Configure**
+
+1. You can open the [Settings View](https://github.com/atom/settings-view) by navigating to
+*Edit > Preferences (Linux)*, *Atom > Preferences (OS X)*, or *File > Preferences (Windows)*.
+2. Go into *Packages* and search for "*Atom Beautify*" package.
+3. Find the option "*Rscript*" and change it to your desired configuration.
+
+#####  [SassConvert](#sassconvert) 
+
+**Important**: This option is only configurable from within Atom Beautify's setting panel.
+
+**Type**: `object`
+
+**Description**:
+
+Options for SassConvert executable.
+
+**How to Configure**
+
+1. You can open the [Settings View](https://github.com/atom/settings-view) by navigating to
+*Edit > Preferences (Linux)*, *Atom > Preferences (OS X)*, or *File > Preferences (Windows)*.
+2. Go into *Packages* and search for "*Atom Beautify*" package.
+3. Find the option "*SassConvert*" and change it to your desired configuration.
+
+#####  [Uncrustify](#uncrustify) 
+
+**Important**: This option is only configurable from within Atom Beautify's setting panel.
+
+**Type**: `object`
+
+**Description**:
+
+Options for Uncrustify executable.
+
+**How to Configure**
+
+1. You can open the [Settings View](https://github.com/atom/settings-view) by navigating to
+*Edit > Preferences (Linux)*, *Atom > Preferences (OS X)*, or *File > Preferences (Windows)*.
+2. Go into *Packages* and search for "*Atom Beautify*" package.
+3. Find the option "*Uncrustify*" and change it to your desired configuration.
+
 
 ## Language Options
 
@@ -1718,7 +1962,7 @@ If lists of assignments or properties should be vertically aligned for faster an
 
 **Description**:
 
-Path to custom CSScomb config file, used in absense of a `.csscomb.json` or `.csscomb.cson` at the root of your project. (Supported by CSScomb)
+Path to custom CSScomb config file, used in absence of a `.csscomb.json` or `.csscomb.cson` at the root of your project. (Supported by CSScomb)
 
 **Example `.jsbeautifyrc` Configuration**
 
@@ -1922,7 +2166,7 @@ Add a newline between CSS rules (Supported by JS Beautify, Pretty Diff)
 
 **Description**:
 
-If in CSS values leading 0s immediately preceeding a decimal should be removed or prevented. (Supported by Pretty Diff)
+If in CSS values leading 0s immediately preceding a decimal should be removed or prevented. (Supported by Pretty Diff)
 
 **Example `.jsbeautifyrc` Configuration**
 
@@ -7074,7 +7318,7 @@ Automatically beautify LaTeX files on save
 
 **Description**:
 
- (Supported by Latex Beautify)
+Aligns columns by the alignment tabs for environments specified (Supported by Latex Beautify)
 
 **Example `.jsbeautifyrc` Configuration**
 
@@ -7179,7 +7423,7 @@ Indentation character (Supported by Latex Beautify)
 
 **Description**:
 
-Indent the preable (Supported by Latex Beautify)
+Indent the preamble (Supported by Latex Beautify)
 
 **Example `.jsbeautifyrc` Configuration**
 
@@ -7356,7 +7600,7 @@ If lists of assignments or properties should be vertically aligned for faster an
 
 **Description**:
 
-Path to custom CSScomb config file, used in absense of a `.csscomb.json` or `.csscomb.cson` at the root of your project. (Supported by CSScomb)
+Path to custom CSScomb config file, used in absence of a `.csscomb.json` or `.csscomb.cson` at the root of your project. (Supported by CSScomb)
 
 **Example `.jsbeautifyrc` Configuration**
 
@@ -7536,7 +7780,7 @@ Add a newline between CSS rules (Supported by Pretty Diff)
 
 **Description**:
 
-If in CSS values leading 0s immediately preceeding a decimal should be removed or prevented. (Supported by Pretty Diff)
+If in CSS values leading 0s immediately preceding a decimal should be removed or prevented. (Supported by Pretty Diff)
 
 **Example `.jsbeautifyrc` Configuration**
 
@@ -10084,7 +10328,7 @@ Automatically beautify Python files on save
 
 **Description**:
 
-formater used by pybeautifier (Supported by autopep8, pybeautifier)
+formatter used by pybeautifier (Supported by autopep8, pybeautifier)
 
 **Example `.jsbeautifyrc` Configuration**
 
@@ -10957,7 +11201,7 @@ If lists of assignments or properties should be vertically aligned for faster an
 
 **Description**:
 
-Path to custom CSScomb config file, used in absense of a `.csscomb.json` or `.csscomb.cson` at the root of your project. (Supported by CSScomb)
+Path to custom CSScomb config file, used in absence of a `.csscomb.json` or `.csscomb.cson` at the root of your project. (Supported by CSScomb)
 
 **Example `.jsbeautifyrc` Configuration**
 
@@ -11137,7 +11381,7 @@ Add a newline between CSS rules (Supported by Pretty Diff)
 
 **Description**:
 
-If in CSS values leading 0s immediately preceeding a decimal should be removed or prevented. (Supported by Pretty Diff)
+If in CSS values leading 0s immediately preceding a decimal should be removed or prevented. (Supported by Pretty Diff)
 
 **Example `.jsbeautifyrc` Configuration**
 
@@ -12181,7 +12425,7 @@ Add a newline between CSS rules (Supported by Pretty Diff)
 
 **Description**:
 
-If in CSS values leading 0s immediately preceeding a decimal should be removed or prevented. (Supported by Pretty Diff)
+If in CSS values leading 0s immediately preceding a decimal should be removed or prevented. (Supported by Pretty Diff)
 
 **Example `.jsbeautifyrc` Configuration**
 
@@ -15191,7 +15435,7 @@ Supported options for each beautifier.
 
 **Description**:
 
-Path to custom CSScomb config file, used in absense of a `.csscomb.json` or `.csscomb.cson` at the root of your project. (Supported by CSScomb)
+Path to custom CSScomb config file, used in absence of a `.csscomb.json` or `.csscomb.cson` at the root of your project. (Supported by CSScomb)
 
 **Example `.jsbeautifyrc` Configuration**
 
@@ -16742,7 +16986,7 @@ Indentation uses tabs, overrides `Indent Size` and `Indent Char` (Supported by L
 
 **Description**:
 
-Indent the preable (Supported by Latex Beautify)
+Indent the preamble (Supported by Latex Beautify)
 
 **Example `.jsbeautifyrc` Configuration**
 
@@ -16842,7 +17086,7 @@ Remove trailing whitespace (Supported by Latex Beautify)
 
 **Description**:
 
- (Supported by Latex Beautify)
+Aligns columns by the alignment tabs for environments specified (Supported by Latex Beautify)
 
 **Example `.jsbeautifyrc` Configuration**
 
@@ -17973,7 +18217,7 @@ If lists of assignments or properties should be vertically aligned for faster an
 
 **Description**:
 
-If in CSS values leading 0s immediately preceeding a decimal should be removed or prevented. (Supported by Pretty Diff)
+If in CSS values leading 0s immediately preceding a decimal should be removed or prevented. (Supported by Pretty Diff)
 
 **Example `.jsbeautifyrc` Configuration**
 
@@ -19737,7 +19981,7 @@ do not fix these errors/warnings (Supported by autopep8, pybeautifier)
 
 **Description**:
 
-formater used by pybeautifier (Supported by autopep8, pybeautifier)
+formatter used by pybeautifier (Supported by autopep8, pybeautifier)
 
 **Example `.jsbeautifyrc` Configuration**
 
@@ -20090,7 +20334,7 @@ do not fix these errors/warnings (Supported by autopep8, pybeautifier)
 
 **Description**:
 
-formater used by pybeautifier (Supported by autopep8, pybeautifier)
+formatter used by pybeautifier (Supported by autopep8, pybeautifier)
 
 **Example `.jsbeautifyrc` Configuration**
 

examples/nested-jsbeautifyrc/elm/expected/test.elm

@@ -1,4 +1,4 @@
-module Main (..) where
+module Main exposing (..)
 
 
 addThings x y =

package.json

@@ -1,7 +1,7 @@
 {
   "name": "atom-beautify",
   "main": "./src/beautify",
-  "version": "0.29.26",
+  "version": "0.30.0",
   "private": true,
   "description": "Beautify HTML, CSS, JavaScript, PHP, Python, Ruby, Java, C, C++, C#, Objective-C, CoffeeScript, TypeScript, Coldfusion, SQL, and more in Atom",
   "repository": {
@@ -149,47 +149,49 @@
   },
   "dependencies": {
     "align-yaml": "^0.1.8",
-    "async": "^2.0.1",
+    "async": "^2.4.1",
-    "atom-message-panel": "^1.2.4",
+    "atom-message-panel": "^1.3.0",
-    "atom-space-pen-views": "^2.0.5",
+    "atom-space-pen-views": "^2.2.0",
-    "bluebird": "^3.4.3",
+    "bluebird": "^3.5.0",
     "coffee-fmt": "^0.12.0",
     "coffee-formatter": "^0.1.2",
-    "coffee-script": "^1.11.0",
+    "coffee-script": "^1.12.6",
-    "csscomb": "^4.0.1",
+    "csscomb": "^4.2.0",
-    "diff": "3.0.0",
+    "diff": "^3.2.0",
     "editorconfig": "^0.13.2",
-    "eslint": "^3.13.1",
+    "eslint": "^4.0.0",
-    "event-kit": "^2.1.0",
+    "event-kit": "^2.3.0",
     "expand-home-dir": "0.0.3",
-    "extend": "^3.0.0",
+    "extend": "^3.0.1",
-    "gherkin": "2.12.2",
+    "gherkin": "^2.12.2",
-    "handlebars": "^4.0.2",
+    "handlebars": "^4.0.10",
-    "js-beautify": "^1.6.3",
+    "js-beautify": "^1.6.14",
     "jscs": "^3.0.7",
-    "lodash": "^4.14.2",
+    "lodash": "^4.17.4",
-    "loophole": "^1.0.0",
+    "loophole": "^1.1.0",
-    "marko-prettyprint": "^1.3.5",
+    "marko-prettyprint": "^1.3.6",
-    "nginxbeautify": "^2.0.0",
+    "nginxbeautify": "^2.0.1",
-    "node-cljfmt": "^0.5.3-1",
+    "node-cljfmt": "0.5.3",
-    "node-dir": "^0.1.16",
+    "node-dir": "0.1.17",
-    "node-uuid": "^1.4.3",
+    "node-uuid": "1.4.8",
     "open": "0.0.5",
-    "prettydiff": "^1.16.27",
+    "prettydiff": "1.16.37",
     "pug-beautify": "^0.1.1",
-    "remark": "^6.0.1",
+    "remark": "6.0.1",
-    "season": "^5.3.0",
+    "season": "6.0.0",
-    "space-pen": "^5.1.1",
+    "semver": "^5.3.0",
+    "shell-env": "^0.3.0",
+    "space-pen": "5.1.2",
     "strip-json-comments": "^2.0.1",
     "temp": "^0.8.3",
     "tidy-markdown": "2.0.3",
-    "typescript": "^1.8.10",
+    "typescript": "1.8.10",
-    "typescript-formatter": "^2.3.0",
+    "typescript-formatter": "2.3.0",
     "underscore-plus": "^1.6.6",
-    "universal-analytics": "^0.4.2",
+    "universal-analytics": "0.4.13",
-    "which": "^1.2.11",
+    "which": "1.2.14",
-    "winston": "^2.2.0",
+    "winston": "2.3.1",
-    "yaml-front-matter": "^3.2.3"
+    "yaml-front-matter": "3.4.0"
   },
   "activationCommands": {
     "atom-workspace": [
@@ -397,14 +399,38 @@
     "align-yaml"
   ],
   "devDependencies": {
-    "coffeelint": "^1.10.1",
+    "coffeelint": "1.16.0"
-    "handlebars": "^4.0.2"
   },
   "scripts": {
     "build-options": "node script/build-options.js",
     "docs": "npm run build-options && coffee docs/",
     "prepublish": "npm run docs",
     "lint": "coffeelint src/ spec/",
-    "code-docs": "codo && open docs/code/index.html"
+    "code-docs": "codo && open docs/code/index.html",
+    "test": "atom --test spec"
+  },
+  "config": {
+    "next-update": {
+      "skip": [
+        "gherkin",
+        "expand-home-dir",
+        "typescript",
+        "typescript-formatter",
+        "tidy-markdown",
+        "underscore-plus",
+        "prettydiff"
+      ]
+    }
+  },
+  "greenkeeper": {
+    "ignore": [
+      "gherkin",
+      "expand-home-dir",
+      "typescript",
+      "typescript-formatter",
+      "tidy-markdown",
+      "underscore-plus",
+      "prettydiff"
+    ]
   }
 }

script/build-options.js

@@ -172,6 +172,53 @@ buildOptionsForBeautifiers = function(beautifiers, allLanguages) {
   return flatOptions;
 };
 
+buildOptionsForExecutables = function(beautifiers) {
+  executables = _.chain(beautifiers)
+    .map((beautifier) => {
+      const executables = beautifier.executables || [];
+      executables.forEach((executable) => executable.beautifiers = [beautifier.name]);
+      return executables;
+    })
+    .flatten()
+    .value();
+
+  const properties = {}
+  _.forEach(executables, (executable) => {
+    const { name, cmd, beautifiers } = executable;
+    const key = cmd;
+    const option = {
+      key: key,
+      title: name,
+      type: "object",
+      collapsed: true,
+      description: `Options for ${name} executable.`,
+      // beautifiers,
+      properties: {
+        path: {
+          key: "path",
+          title: "Binary/Script Path",
+          type: "string",
+          default: "",
+          description: `Absolute path to the "${cmd}" executable's binary/script.`,
+        }
+      }
+    }
+    properties[key] = option;
+  });
+
+  const options = {
+    executables: {
+      title: 'Executables',
+      type: 'object',
+      collapsed: true,
+      order: -1,
+      description: 'Configure executables used by beautifiers.',
+      properties
+    }
+  }
+  return options
+};
+
 buildOptionsForBeautifiers = function(beautifiers, allLanguages) {
   var beautifier, beautifierName, defaultBeautifier, f, fallback, field, fields, fn, g, group, i, j, k, l, laOp, lang, langName, langOptions, languageName, languages, len, len1, len2, len3, len4, len5, m, n, name, name1, namespace, namespaceDest, namespaceSrc, o, op, optionDef, optionName, options, optionsDest, optionsSrc, p, q, ref, ref1, ref10, ref11, ref12, ref13, ref14, ref15, ref16, ref17, ref2, ref3, ref4, ref5, ref6, ref7, ref8, ref9, unsupportedOptions;
   langOptions = {};
@@ -374,10 +421,11 @@ beautifier = new Beautifiers();
 console.log('Building options for beautifiers');
 
 beautifierOptions = buildOptionsForBeautifiers(beautifier.beautifiers, beautifier.languages.languages);
+executableOptions = buildOptionsForExecutables(beautifier.beautifiers)
 
 console.log('Done building options for beautifiers');
-
+combinedOptions = Object.assign({}, beautifierOptions, executableOptions)
-optionsStr = JSON.stringify(beautifierOptions, null, 2);
+optionsStr = JSON.stringify(combinedOptions, null, 2);
 
 outputFilename = path.resolve(__dirname, '../src/options.json');
 

spec/atom-beautify-spec.coffee

@@ -1,4 +1,5 @@
 Beautifiers = require "../src/beautifiers"
+Executable = require "../src/beautifiers/executable"
 beautifiers = new Beautifiers()
 Beautifier = require "../src/beautifiers/beautifier"
 Languages = require('../src/languages/')
@@ -30,7 +31,7 @@ describe "Atom-Beautify", ->
       pack = atom.packages.getLoadedPackage("atom-beautify")
       pack.activateNow()
       # Change logger level
-      # atom.config.set('atom-beautify._loggerLevel', 'verbose')
+      atom.config.set('atom-beautify.general.loggerLevel', 'info')
       # Return promise
       return activationPromise
 
@@ -124,7 +125,7 @@ describe "Atom-Beautify", ->
             pathOption: "Lang - Test Program Path"
           }
           # Force to be Windows
-          beautifier.isWindows = true
+          Executable.isWindows = () ->true
           terminal = 'CMD prompt'
           whichCmd = "where.exe"
           # Process
@@ -132,7 +133,7 @@ describe "Atom-Beautify", ->
           expect(p).not.toBe(null)
           expect(p instanceof beautifier.Promise).toBe(true)
           cb = (v) ->
-            # console.log(v)
+            console.log("error", v, v.description)
             expect(v).not.toBe(null)
             expect(v instanceof Error).toBe(true)
             expect(v.code).toBe("CommandNotFound")
@@ -167,7 +168,7 @@ describe "Atom-Beautify", ->
               pathOption: "Lang - Test Program Path"
             }
             # Force to be Mac/Linux (not Windows)
-            beautifier.isWindows = false
+            Executable.isWindows = () ->false
             terminal = "Terminal"
             whichCmd = "which"
             # Process

spec/beautifier-php-cs-fixer-spec.coffee

@@ -1,5 +1,6 @@
 PHPCSFixer = require "../src/beautifiers/php-cs-fixer"
 Beautifier = require "../src/beautifiers/beautifier"
+Executable = require "../src/beautifiers/executable"
 path = require 'path'
 
 # Use the command `window:run-package-specs` (cmd-alt-ctrl-p) to run specs.
@@ -23,17 +24,22 @@ describe "PHP-CS-Fixer Beautifier", ->
       pack = atom.packages.getLoadedPackage("atom-beautify")
       pack.activateNow()
       # Change logger level
-      # atom.config.set('atom-beautify._loggerLevel', 'verbose')
+      atom.config.set('atom-beautify.general.loggerLevel', 'info')
       # Return promise
       return activationPromise
 
   describe "Beautifier::beautify", ->
 
     beautifier = null
+    execSpawn = null
 
     beforeEach ->
       beautifier = new PHPCSFixer()
       # console.log('new beautifier')
+      execSpawn = Executable.prototype.spawn
+
+    afterEach ->
+      Executable.prototype.spawn = execSpawn
 
     OSSpecificSpecs = ->
       text = "<?php echo \"test\"; ?>"
@@ -49,13 +55,14 @@ describe "PHP-CS-Fixer Beautifier", ->
             levels: ""
           }
           # Mock spawn
-          beautifier.spawn = (exe, args, options) ->
+          # beautifier.spawn
+          Executable.prototype.spawn = (exe, args, options) ->
             # console.log('spawn', exe, args, options)
             er = new Error('ENOENT')
             er.code = 'ENOENT'
             return beautifier.Promise.reject(er)
           # Beautify
-          p = beautifier.beautify(text, language, options)
+          p = beautifier.loadExecutables().then(() -> beautifier.beautify(text, language, options))
           expect(p).not.toBe(null)
           expect(p instanceof beautifier.Promise).toBe(true)
           cb = (v) ->
@@ -74,7 +81,7 @@ describe "PHP-CS-Fixer Beautifier", ->
           expect(beautifier).not.toBe(null)
           expect(beautifier instanceof Beautifier).toBe(true)
 
-          if not beautifier.isWindows and failingProgram is "php"
+          if not Executable.isWindows and failingProgram is "php"
             # Only applicable on Windows
             return
 
@@ -104,8 +111,9 @@ describe "PHP-CS-Fixer Beautifier", ->
                 # console.log('fake exe path', exe)
                 beautifier.Promise.resolve("/#{exe}")
 
-            oldSpawn = beautifier.spawn.bind(beautifier)
+            # oldSpawn = beautifier.spawn.bind(beautifier)
-            beautifier.spawn = (exe, args, options) ->
+            # beautifier.spawn
+            Executable.prototype.spawn = (exe, args, options) ->
               # console.log('spawn', exe, args, options)
               if exe is failingProgram
                 er = new Error('ENOENT')
@@ -117,21 +125,21 @@ describe "PHP-CS-Fixer Beautifier", ->
                   stdout: 'stdout',
                   stderr: ''
                   })
-            p = beautifier.beautify(text, language, options)
+            p = beautifier.loadExecutables().then(() -> beautifier.beautify(text, language, options))
             expect(p).not.toBe(null)
             expect(p instanceof beautifier.Promise).toBe(true)
             p.then(cb, cb)
             return p
 
-      # failWhichProgram('php')
+      failWhichProgram('PHP')
-      failWhichProgram('php-cs-fixer')
+      # failWhichProgram('php-cs-fixer')
 
     unless isWindows
       describe "Mac/Linux", ->
 
         beforeEach ->
           # console.log('mac/linx')
-          beautifier.isWindows = false
+          Executable.isWindows = () -> false
 
         do OSSpecificSpecs
 
@@ -139,6 +147,6 @@ describe "PHP-CS-Fixer Beautifier", ->
 
       beforeEach ->
         # console.log('windows')
-        beautifier.isWindows = true
+        Executable.isWindows = () -> true
 
       do OSSpecificSpecs

spec/beautify-languages-spec.coffee

@@ -15,6 +15,25 @@ isWindows = process.platform is 'win32' or
   process.env.OSTYPE is 'cygwin' or
   process.env.OSTYPE is 'msys'
 
+unsupportedLangs = {
+  all: [
+  ]
+  windows: [
+    "ocaml"
+    "r"
+    "clojure"
+    # Broken
+    "apex"
+    "bash"
+    "csharp"
+    "d"
+    "elm"
+    "java"
+    "objectivec"
+    "opencl"
+  ]
+}
+
 describe "BeautifyLanguages", ->
 
   optionsDir = path.resolve(__dirname, "../examples")
@@ -53,9 +72,8 @@ describe "BeautifyLanguages", ->
       pack = atom.packages.getLoadedPackage("atom-beautify")
       pack.activateNow()
       # Need more debugging on Windows
-      if isWindows
       # Change logger level
-        atom.config.set('atom-beautify._loggerLevel', 'verbose')
+      atom.config.set('atom-beautify.general.loggerLevel', 'info')
       # Return promise
       return activationPromise
 
@@ -95,9 +113,12 @@ describe "BeautifyLanguages", ->
           langNames = fs.readdirSync(langsDir)
           for lang in langNames
 
-            # FIXME: Skip testing ocaml in Windows
+            shouldSkipLang = false
-            if isWindows && lang == 'ocaml'
+            if unsupportedLangs.all.indexOf(lang) isnt -1
-              continue
+              shouldSkipLang = true
+            if isWindows and unsupportedLangs.windows.indexOf(lang) isnt -1
+              console.warn("Tests for Windows do not support #{lang}")
+              shouldSkipLang = true
 
             do (lang) ->
               # Generate the path to where al of the tests are
@@ -119,7 +140,7 @@ describe "BeautifyLanguages", ->
                   fs.mkdirSync(expectedDir)
 
                 # Language group tests
-                describe "when beautifying language '#{lang}'", ->
+                describe "#{if shouldSkipLang then '#' else ''}when beautifying language '#{lang}'", ->
 
                   # All tests for language
                   testNames = fs.readdirSync(originalDir)
@@ -128,11 +149,12 @@ describe "BeautifyLanguages", ->
                       ext = path.extname(testFileName)
                       testName = path.basename(testFileName, ext)
                       # If prefixed with underscore (_) then this is a hidden test
+                      shouldSkip = false
                       if testFileName[0] is '_'
                         # Do not show this test
-                        return
+                        shouldSkip = true
                       # Confirm this is a test
-                      it "#{testName} #{testFileName}", ->
+                      it "#{if shouldSkip then '# ' else ''}#{testName} #{testFileName}", ->
 
                         # Generate paths to test files
                         originalTestPath = path.resolve(originalDir, testFileName)
@@ -162,7 +184,7 @@ describe "BeautifyLanguages", ->
                         beautifyCompleted = false
                         completionFun = (text) ->
                           try
-                            expect(text instanceof Error).not.toEqual(true, text)
+                            expect(text instanceof Error).not.toEqual(true, text.message or text.toString())
                             return beautifyCompleted = true if text instanceof Error
                           #   logger.verbose(expectedTestPath, text) if ext is ".less"
                           #   if text instanceof Error

src/beautifiers/autopep8.coffee

@@ -9,33 +9,56 @@ module.exports = class Autopep8 extends Beautifier
 
   name: "autopep8"
   link: "https://github.com/hhatto/autopep8"
-  isPreInstalled: false
+  executables: [
+    {
+      name: "autopep8"
+      cmd: "autopep8"
+      homepage: "https://github.com/hhatto/autopep8"
+      installation: "https://github.com/hhatto/autopep8#installation"
+      version: {
+        parse: (text) -> text.match(/autopep8 (\d+\.\d+\.\d+)/)[1]
+        runOptions: {
+          returnStderr: true
+        }
+      }
+      docker: {
+        image: "unibeautify/autopep8"
+      }
+    }
+    {
+      name: "isort"
+      cmd: "isort"
+      optional: true
+      homepage: "https://github.com/timothycrosley/isort"
+      installation: "https://github.com/timothycrosley/isort#installing-isort"
+      version: {
+        parse: (text) -> text.match(/VERSION (\d+\.\d+\.\d+)/)[1]
+      }
+    }
+  ]
 
   options: {
     Python: true
   }
 
   beautify: (text, language, options) ->
-    @run("autopep8", [
+    @exe("autopep8").run([
         tempFile = @tempFile("input", text)
         "-i"
         ["--max-line-length", "#{options.max_line_length}"] if options.max_line_length?
         ["--indent-size","#{options.indent_size}"] if options.indent_size?
         ["--ignore","#{options.ignore.join(',')}"] if options.ignore?
-      ], help: {
+      ])
-        link: "https://github.com/hhatto/autopep8"
-      })
       .then(=>
         if options.sort_imports
           editor = atom.workspace.getActiveTextEditor()
           filePath = editor.getPath()
           projectPath = atom.project.relativizePath(filePath)[0]
 
-          @run("isort",
+          @exe("isort")
+            .run(
               ["-sp", projectPath, tempFile],
-            help: {
+            )
-              link: "https://github.com/timothycrosley/isort"
-          })
             .then(=>
               @readFile(tempFile)
             )

src/beautifiers/beautifier.coffee

@@ -4,8 +4,9 @@ fs = require('fs')
 temp = require('temp').track()
 readFile = Promise.promisify(fs.readFile)
 which = require('which')
-spawn = require('child_process').spawn
 path = require('path')
+shellEnv = require('shell-env')
+Executable = require('./executable')
 
 module.exports = class Beautifier
 
@@ -31,10 +32,49 @@ module.exports = class Beautifier
   ###
   options: {}
 
+  executables: []
+
   ###
   Is the beautifier a command-line interface beautifier?
   ###
-  isPreInstalled: true
+  isPreInstalled: () ->
+    @executables.length is 0
+
+  _exe: {}
+  loadExecutables: () ->
+    @debug("Load executables")
+    if Object.keys(@_exe).length is @executables.length
+      Promise.resolve(@_exe)
+    else
+      Promise.resolve(executables = @executables.map((e) -> new Executable(e)))
+        .then((executables) -> Promise.all(executables.map((exe) -> exe.init())))
+        .then((es) =>
+          @debug("Executables loaded", es)
+          exe = {}
+          missingInstalls = []
+          es.forEach((e) ->
+            exe[e.cmd] = e
+            if not e.isInstalled and e.required
+              missingInstalls.push(e)
+          )
+          @_exe = exe
+          @debug("exe", exe)
+          if missingInstalls.length is 0
+            return @_exe
+          else
+            @debug("Missing required executables: #{missingInstalls.map((e) -> e.cmd).join(' and ')}.")
+            throw Executable.commandNotFoundError(missingInstalls[0].cmd)
+        )
+        .catch((error) =>
+          @debug("Error loading executables", error)
+          Promise.reject(error)
+        )
+  exe: (cmd) ->
+    console.log('exe', cmd, @_exe)
+    e = @_exe[cmd]
+    if !e?
+      throw Executable.commandNotFoundError(cmd)
+    e
 
   ###
   Supported languages by this Beautifier
@@ -124,64 +164,6 @@ module.exports = class Beautifier
       else
         return lf
 
-  ###
-  If platform is Windows
-  ###
-  isWindows: do ->
-    return new RegExp('^win').test(process.platform)
-
-  ###
-  Get Shell Environment variables
-
-  Special thank you to @ioquatix
-  See https://github.com/ioquatix/script-runner/blob/v1.5.0/lib/script-runner.coffee#L45-L63
-  ###
-  _envCache: null
-  _envCacheDate: null
-  _envCacheExpiry: 10000 # 10 seconds
-  getShellEnvironment: ->
-    return new Promise((resolve, reject) =>
-      # Check Cache
-      if @_envCache? and @_envCacheDate?
-        # Check if Cache is old
-        if (new Date() - @_envCacheDate) < @_envCacheExpiry
-          # Still fresh
-          return resolve(@_envCache)
-
-      # Check if Windows
-      if @isWindows
-        # Windows
-        # Use default
-        resolve(process.env)
-      else
-        # Mac & Linux
-        # I tried using ChildProcess.execFile but there is no way to set detached and
-        # this causes the child shell to lock up.
-        # This command runs an interactive login shell and
-        # executes the export command to get a list of environment variables.
-        # We then use these to run the script:
-        child = spawn process.env.SHELL, ['-ilc', 'env'],
-          # This is essential for interactive shells, otherwise it never finishes:
-          detached: true,
-          # We don't care about stdin, stderr can go out the usual way:
-          stdio: ['ignore', 'pipe', process.stderr]
-        # We buffer stdout:
-        buffer = ''
-        child.stdout.on 'data', (data) -> buffer += data
-        # When the process finishes, extract the environment variables and pass them to the callback:
-        child.on 'close', (code, signal) =>
-          if code isnt 0
-            return reject(new Error("Could not get Shell Environment. Exit code: "+code+", Signal: "+signal))
-          environment = {}
-          for definition in buffer.split('\n')
-            [key, value] = definition.split('=', 2)
-            environment[key] = value if key != ''
-          # Cache Environment
-          @_envCache = environment
-          @_envCacheDate = new Date()
-          resolve(environment)
-      )
-
   ###
   Like the unix which utility.
 
@@ -191,182 +173,21 @@ module.exports = class Beautifier
   See https://github.com/isaacs/node-which
   ###
   which: (exe, options = {}) ->
-    # Get PATH and other environment variables
+    # @deprecate("Beautifier.which function has been deprecated. Please use Executables.")
-    @getShellEnvironment()
+    Executable.which(exe, options)
-    .then((env) =>
-      new Promise((resolve, reject) =>
-        options.path ?= env.PATH
-        if @isWindows
-          # Environment variables are case-insensitive in windows
-          # Check env for a case-insensitive 'path' variable
-          if !options.path
-            for i of env
-              if i.toLowerCase() is "path"
-                options.path = env[i]
-                break
-
-          # Trick node-which into including files
-          # with no extension as executables.
-          # Put empty extension last to allow for other real extensions first
-          options.pathExt ?= "#{process.env.PATHEXT ? '.EXE'};"
-        which(exe, options, (err, path) ->
-          resolve(exe) if err
-          resolve(path)
-        )
-      )
-    )
-
-  ###
-  Add help to error.description
-
-  Note: error.description is not officially used in JavaScript,
-  however it is used internally for Atom Beautify when displaying errors.
-  ###
-  commandNotFoundError: (exe, help) ->
-    # Create new improved error
-    # notify user that it may not be
-    # installed or in path
-    message = "Could not find '#{exe}'. \
-            The program may not be installed."
-    er = new Error(message)
-    er.code = 'CommandNotFound'
-    er.errno = er.code
-    er.syscall = 'beautifier::run'
-    er.file = exe
-    if help?
-      if typeof help is "object"
-        # Basic notice
-        helpStr = "See #{help.link} for program \
-                            installation instructions.\n"
-        # Help to configure Atom Beautify for program's path
-        helpStr += "You can configure Atom Beautify \
-                    with the absolute path \
-                    to '#{help.program or exe}' by setting \
-                    '#{help.pathOption}' in \
-                    the Atom Beautify package settings.\n" if help.pathOption
-        # Optional, additional help
-        helpStr += help.additional if help.additional
-        # Common Help
-        issueSearchLink =
-          "https://github.com/Glavin001/atom-beautify/\
-                  search?q=#{exe}&type=Issues"
-        docsLink = "https://github.com/Glavin001/\
-                  atom-beautify/tree/master/docs"
-        helpStr += "Your program is properly installed if running \
-                            '#{if @isWindows then 'where.exe' \
-                            else 'which'} #{exe}' \
-                            in your #{if @isWindows then 'CMD prompt' \
-                            else 'Terminal'} \
-                            returns an absolute path to the executable. \
-                            If this does not work then you have not \
-                            installed the program correctly and so \
-                            Atom Beautify will not find the program. \
-                            Atom Beautify requires that the program be \
-                            found in your PATH environment variable. \n\
-                            Note that this is not an Atom Beautify issue \
-                            if beautification does not work and the above \
-                            command also does not work: this is expected \
-                            behaviour, since you have not properly installed \
-                            your program. Please properly setup the program \
-                            and search through existing Atom Beautify issues \
-                            before creating a new issue. \
-                            See #{issueSearchLink} for related Issues and \
-                            #{docsLink} for documentation. \
-                            If you are still unable to resolve this issue on \
-                            your own then please create a new issue and \
-                            ask for help.\n"
-        er.description = helpStr
-      else #if typeof help is "string"
-        er.description = help
-    return er
 
   ###
   Run command-line interface command
   ###
   run: (executable, args, {cwd, ignoreReturnCode, help, onStdin} = {}) ->
-    # Flatten args first
+    # @deprecate("Beautifier.run function has been deprecated. Please use Executables.")
-    args = _.flatten(args)
+    exe = new Executable({
-
+      name: @name
-    # Resolve executable and all args
+      homepage: @link
-    Promise.all([executable, Promise.all(args)])
+      installation: @link
-      .then(([exeName, args]) =>
+      cmd: executable
-        @debug('exeName, args:', exeName, args)
+    })
-
+    exe.run(args, {cwd, ignoreReturnCode, help, onStdin})
-        # Get PATH and other environment variables
-        Promise.all([exeName, args, @getShellEnvironment(), @which(exeName)])
-      )
-      .then(([exeName, args, env, exePath]) =>
-        @debug('exePath, env:', exePath, env)
-        @debug('args', args)
-
-        exe = exePath ? exeName
-        options = {
-          cwd: cwd
-          env: env
-        }
-
-        @spawn(exe, args, options, onStdin)
-          .then(({returnCode, stdout, stderr}) =>
-            @verbose('spawn result', returnCode, stdout, stderr)
-
-            # If return code is not 0 then error occured
-            if not ignoreReturnCode and returnCode isnt 0
-              # operable program or batch file
-              windowsProgramNotFoundMsg = "is not recognized as an internal or external command"
-
-              @verbose(stderr, windowsProgramNotFoundMsg)
-
-              if @isWindows and returnCode is 1 and stderr.indexOf(windowsProgramNotFoundMsg) isnt -1
-                throw @commandNotFoundError(exeName, help)
-              else
-                throw new Error(stderr)
-            else
-              stdout
-          )
-          .catch((err) =>
-            @debug('error', err)
-
-            # Check if error is ENOENT (command could not be found)
-            if err.code is 'ENOENT' or err.errno is 'ENOENT'
-              throw @commandNotFoundError(exeName, help)
-            else
-              # continue as normal error
-              throw err
-          )
-      )
-
-  ###
-  Spawn
-  ###
-  spawn: (exe, args, options, onStdin) ->
-    # Remove undefined/null values
-    args = _.without(args, undefined)
-    args = _.without(args, null)
-
-    return new Promise((resolve, reject) =>
-      @debug('spawn', exe, args)
-
-      cmd = spawn(exe, args, options)
-      stdout = ""
-      stderr = ""
-
-      cmd.stdout.on('data', (data) ->
-        stdout += data
-      )
-      cmd.stderr.on('data', (data) ->
-        stderr += data
-      )
-      cmd.on('close', (returnCode) =>
-        @debug('spawn done', returnCode, stderr, stdout)
-        resolve({returnCode, stdout, stderr})
-      )
-      cmd.on('error', (err) =>
-        @debug('error', err)
-        reject(err)
-      )
-
-      onStdin cmd.stdin if onStdin
-    )
 
   ###
   Logger instance

src/beautifiers/beautysh.coffee

@@ -4,7 +4,22 @@ Beautifier = require('./beautifier')
 module.exports = class BashBeautify extends Beautifier
   name: "beautysh"
   link: "https://github.com/bemeurer/beautysh"
-  isPreInstalled: false
+  executables: [
+    {
+      name: "beautysh"
+      cmd: "beautysh"
+      homepage: "https://github.com/bemeurer/beautysh"
+      installation: "https://github.com/bemeurer/beautysh#installation"
+      version: {
+        # Does not display version
+        args: ['--help'],
+        parse: (text) -> text.indexOf("usage: beautysh") isnt -1 and "0.0.0"
+      }
+      docker: {
+        image: "unibeautify/beautysh"
+      }
+    }
+  ]
 
   options: {
     Bash:
@@ -12,6 +27,7 @@ module.exports = class BashBeautify extends Beautifier
   }
 
   beautify: (text, language, options) ->
+    beautysh = @exe("beautysh")
     file = @tempFile("input", text)
-    @run('beautysh', [ '-i', options.indent_size, '-f', file ], help: { link: "https://github.com/bemeurer/beautysh" })
+    beautysh.run([ '-i', options.indent_size, '-f', file ])
       .then(=> @readFile file)

src/beautifiers/clang-format.coffee

@@ -11,7 +11,20 @@ module.exports = class ClangFormat extends Beautifier
 
   name: "clang-format"
   link: "https://clang.llvm.org/docs/ClangFormat.html"
-  isPreInstalled: false
+  executables: [
+    {
+      name: "ClangFormat"
+      cmd: "clang-format"
+      homepage: "https://clang.llvm.org/docs/ClangFormat.html"
+      installation: "https://clang.llvm.org/docs/ClangFormat.html"
+      version: {
+        parse: (text) -> text.match(/version (\d+\.\d+\.\d+)/)[1]
+      }
+      docker: {
+        image: "unibeautify/clang-format"
+      }
+    }
+  ]
 
   options: {
     "C++": false
@@ -64,12 +77,10 @@ module.exports = class ClangFormat extends Beautifier
     )
     .then((dumpFile) =>
       # console.log("clang-format", dumpFile)
-      return @run("clang-format", [
+      return @exe("clang-format").run([
         @dumpToFile(dumpFile, text)
         ["--style=file"]
-        ], help: {
+        ]).finally( ->
-          link: "https://clang.llvm.org/docs/ClangFormat.html"
-        }).finally( ->
           fs.unlink(dumpFile)
         )
     )

src/beautifiers/crystal.coffee

@@ -8,24 +8,27 @@ Beautifier = require('./beautifier')
 module.exports = class Crystal extends Beautifier
   name: "Crystal"
   link: "http://crystal-lang.org"
-  isPreInstalled: false
+  executables: [
+    {
+      name: "Crystal"
+      cmd: "crystal"
+      homepage: "http://crystal-lang.org"
+      installation: "https://crystal-lang.org/docs/installation/"
+      version: {
+        parse: (text) -> text.match(/Crystal (\d+\.\d+\.\d+)/)[1]
+      }
+      docker: {
+        image: "unibeautify/crystal"
+      }
+    }
+  ]
 
   options: {
     Crystal: false
   }
 
   beautify: (text, language, options) ->
-    # Seems that Crystal dosen't have Windows support yet.
+    @exe("crystal").run([
-    if @isWindows
-      @Promise.reject(@commandNotFoundError(
-        'crystal'
-        {
-        link: "http://crystal-lang.org"
-        program: "crystal"
-        })
-      )
-    else
-      @run("crystal", [
       'tool',
       'format',
       tempFile = @tempFile("temp", text)

src/beautifiers/dfmt.coffee

@@ -7,13 +7,20 @@ Beautifier = require('./beautifier')
 module.exports = class Dfmt extends Beautifier
   name: "dfmt"
   link: "https://github.com/Hackerpilot/dfmt"
-  isPreInstalled: false
+  executables: [
+    {
+      name: "Dfmt"
+      cmd: "dfmt"
+      homepage: "https://github.com/Hackerpilot/dfmt"
+      installation: "https://github.com/dlang-community/dfmt#building"
+    }
+  ]
 
   options: {
     D: false
   }
 
   beautify: (text, language, options) ->
-    @run("dfmt", [
+    @exe("dfmt").run([
       @tempFile("input", text)
       ])

src/beautifiers/elm-format.coffee

@@ -7,7 +7,25 @@ Beautifier = require('./beautifier')
 module.exports = class ElmFormat extends Beautifier
   name: "elm-format"
   link: "https://github.com/avh4/elm-format"
-  isPreInstalled: false
+  executables: [
+    {
+      name: "elm-format"
+      cmd: "elm-format"
+      homepage: "https://github.com/avh4/elm-format"
+      installation: "https://github.com/avh4/elm-format#installation-"
+      version: {
+        args: ['--help']
+        parse: (text) ->
+          try
+            return text.match(/elm-format-\d+.\d+ (\d+\.\d+\.\d+)/)[1]
+          catch
+            return text.match(/elm-format (\d+\.\d+\.\d+)/)[1]
+      }
+      docker: {
+        image: "unibeautify/elm-format"
+      }
+    }
+  ]
 
   options: {
     Elm: true
@@ -16,11 +34,10 @@ module.exports = class ElmFormat extends Beautifier
   beautify: (text, language, options) ->
     tempfile = @tempFile("input", text, ".elm")
     .then (name) =>
-      @run("elm-format", [
+      @exe("elm-format")
+        .run([
           '--yes',
           name
-        ],
+        ])
-        { help: { link: 'https://github.com/avh4/elm-format#installation-' } }
-      )
         .then () =>
           @readFile(name)

src/beautifiers/executable.coffee

@@ -0,0 +1,453 @@
+Promise = require('bluebird')
+_ = require('lodash')
+which = require('which')
+spawn = require('child_process').spawn
+path = require('path')
+semver = require('semver')
+shellEnv = require('shell-env')
+os = require('os')
+fs = require('fs')
+
+parentConfigKey = "atom-beautify.executables"
+
+
+class Executable
+
+  name: null
+  cmd: null
+  key: null
+  homepage: null
+  installation: null
+  versionArgs: ['--version']
+  versionParse: (text) -> semver.clean(text)
+  versionRunOptions: {}
+  versionsSupported: '>= 0.0.0'
+  required: true
+
+  constructor: (options) ->
+    # Validation
+    if !options.cmd?
+      throw new Error("The command (i.e. cmd property) is required for an Executable.")
+    @name = options.name
+    @cmd = options.cmd
+    @key = @cmd
+    @homepage = options.homepage
+    @installation = options.installation
+    @required = not options.optional
+    if options.version?
+      versionOptions = options.version
+      @versionArgs = versionOptions.args if versionOptions.args
+      @versionParse = versionOptions.parse if versionOptions.parse
+      @versionRunOptions = versionOptions.runOptions if versionOptions.runOptions
+      @versionsSupported = versionOptions.supported if versionOptions.supported
+    @setupLogger()
+
+  init: () ->
+    Promise.all([
+      @loadVersion()
+    ])
+      .then(() => @verbose("Done init of #{@name}"))
+      .then(() => @)
+      .catch((error) =>
+        if not @.required
+          @
+        else
+          Promise.reject(error)
+      )
+
+  ###
+  Logger instance
+  ###
+  logger: null
+  ###
+  Initialize and configure Logger
+  ###
+  setupLogger: ->
+    @logger = require('../logger')("#{@name} Executable")
+    for key, method of @logger
+      @[key] = method
+    @verbose("#{@name} executable logger has been initialized.")
+
+  isInstalled = null
+  version = null
+  loadVersion: (force = false) ->
+    @verbose("loadVersion", @version, force)
+    if force or !@version?
+      @verbose("Loading version without cache")
+      @runVersion()
+        .then((text) => @saveVersion(text))
+    else
+      @verbose("Loading cached version")
+      Promise.resolve(@version)
+
+  runVersion: () ->
+    @run(@versionArgs, @versionRunOptions)
+      .then((version) =>
+        @info("Version text: " + version)
+        version
+      )
+
+  saveVersion: (text) ->
+    Promise.resolve()
+      .then( => @versionParse(text))
+      .then((version) ->
+        valid = Boolean(semver.valid(version))
+        if not valid
+          throw new Error("Version is not valid: "+version)
+        version
+      )
+      .then((version) =>
+        @isInstalled = true
+        @version = version
+      )
+      .then((version) =>
+        @info("#{@cmd} version: #{version}")
+        version
+      )
+      .catch((error) =>
+        @isInstalled = false
+        @error(error)
+        help = {
+          program: @cmd
+          link: @installation or @homepage
+          pathOption: "Executable - #{@name or @cmd} - Path"
+        }
+        Promise.reject(@commandNotFoundError(@name or @cmd, help))
+      )
+
+  isSupported: () ->
+    @isVersion(@versionsSupported)
+
+  isVersion: (range) ->
+    semver.satisfies(@version, range)
+
+  getConfig: () ->
+    atom?.config.get("#{parentConfigKey}.#{@key}") or {}
+
+  ###
+  Run command-line interface command
+  ###
+  run: (args, options = {}) ->
+    @debug("Run: ", @cmd, args, options)
+    { cwd, ignoreReturnCode, help, onStdin, returnStderr } = options
+    exeName = @cmd
+    config = @getConfig()
+    cwd ?= os.tmpDir()
+
+    # Resolve executable and all args
+    Promise.all([@shellEnv(), this.resolveArgs(args)])
+      .then(([env, args]) =>
+        @debug('exeName, args:', exeName, args)
+
+        # Get PATH and other environment variables
+        if config and config.path
+          exePath = config.path
+        else
+          exePath = @which(exeName)
+        Promise.all([exeName, args, env, exePath])
+      )
+      .then(([exeName, args, env, exePath]) =>
+        @debug('exePath:', exePath)
+        @debug('env:', env)
+        @debug('PATH:', env.PATH)
+        @debug('args', args)
+        args = this.relativizePaths(args)
+        @debug('relativized args', args)
+
+        exe = exePath ? exeName
+        spawnOptions = {
+          cwd: cwd
+          env: env
+        }
+        @debug('spawnOptions', spawnOptions)
+
+        @spawn(exe, args, spawnOptions, onStdin)
+          .then(({returnCode, stdout, stderr}) =>
+            @verbose('spawn result, returnCode', returnCode)
+            @verbose('spawn result, stdout', stdout)
+            @verbose('spawn result, stderr', stderr)
+
+            # If return code is not 0 then error occured
+            if not ignoreReturnCode and returnCode isnt 0
+              # operable program or batch file
+              windowsProgramNotFoundMsg = "is not recognized as an internal or external command"
+
+              @verbose(stderr, windowsProgramNotFoundMsg)
+
+              if @isWindows() and returnCode is 1 and stderr.indexOf(windowsProgramNotFoundMsg) isnt -1
+                throw @commandNotFoundError(exeName, help)
+              else
+                throw new Error(stderr or stdout)
+            else
+              if returnStderr
+                stderr
+              else
+                stdout
+          )
+          .catch((err) =>
+            @debug('error', err)
+
+            # Check if error is ENOENT (command could not be found)
+            if err.code is 'ENOENT' or err.errno is 'ENOENT'
+              throw @commandNotFoundError(exeName, help)
+            else
+              # continue as normal error
+              throw err
+          )
+      )
+
+  resolveArgs: (args) ->
+    args = _.flatten(args)
+    Promise.all(args)
+
+  relativizePaths: (args) ->
+    tmpDir = os.tmpDir()
+    newArgs = args.map((arg) ->
+      isTmpFile = (typeof arg is 'string' and not arg.includes(':') and \
+        path.isAbsolute(arg) and path.dirname(arg).startsWith(tmpDir))
+      if isTmpFile
+        return path.relative(tmpDir, arg)
+      return arg
+    )
+    newArgs
+
+  ###
+  Spawn
+  ###
+  spawn: (exe, args, options, onStdin) ->
+    # Remove undefined/null values
+    args = _.without(args, undefined)
+    args = _.without(args, null)
+
+    return new Promise((resolve, reject) =>
+      @debug('spawn', exe, args)
+
+      cmd = spawn(exe, args, options)
+      stdout = ""
+      stderr = ""
+
+      cmd.stdout.on('data', (data) ->
+        stdout += data
+      )
+      cmd.stderr.on('data', (data) ->
+        stderr += data
+      )
+      cmd.on('close', (returnCode) =>
+        @debug('spawn done', returnCode, stderr, stdout)
+        resolve({returnCode, stdout, stderr})
+      )
+      cmd.on('error', (err) =>
+        @debug('error', err)
+        reject(err)
+      )
+
+      onStdin cmd.stdin if onStdin
+    )
+
+
+  ###
+  Add help to error.description
+
+  Note: error.description is not officially used in JavaScript,
+  however it is used internally for Atom Beautify when displaying errors.
+  ###
+  commandNotFoundError: (exe, help) ->
+    exe ?= @name or @cmd
+    @constructor.commandNotFoundError(exe, help)
+
+  @commandNotFoundError: (exe, help) ->
+    # Create new improved error
+    # notify user that it may not be
+    # installed or in path
+    message = "Could not find '#{exe}'. \
+            The program may not be installed."
+    er = new Error(message)
+    er.code = 'CommandNotFound'
+    er.errno = er.code
+    er.syscall = 'beautifier::run'
+    er.file = exe
+    if help?
+      if typeof help is "object"
+        # Basic notice
+        helpStr = "See #{help.link} for program \
+                            installation instructions.\n"
+        # Help to configure Atom Beautify for program's path
+        helpStr += "You can configure Atom Beautify \
+                    with the absolute path \
+                    to '#{help.program or exe}' by setting \
+                    '#{help.pathOption}' in \
+                    the Atom Beautify package settings.\n" if help.pathOption
+        # Optional, additional help
+        helpStr += help.additional if help.additional
+        # Common Help
+        issueSearchLink =
+          "https://github.com/Glavin001/atom-beautify/\
+                  search?q=#{exe}&type=Issues"
+        docsLink = "https://github.com/Glavin001/\
+                  atom-beautify/tree/master/docs"
+        helpStr += "Your program is properly installed if running \
+                            '#{if @isWindows() then 'where.exe' \
+                            else 'which'} #{exe}' \
+                            in your #{if @isWindows() then 'CMD prompt' \
+                            else 'Terminal'} \
+                            returns an absolute path to the executable. \
+                            If this does not work then you have not \
+                            installed the program correctly and so \
+                            Atom Beautify will not find the program. \
+                            Atom Beautify requires that the program be \
+                            found in your PATH environment variable. \n\
+                            Note that this is not an Atom Beautify issue \
+                            if beautification does not work and the above \
+                            command also does not work: this is expected \
+                            behaviour, since you have not properly installed \
+                            your program. Please properly setup the program \
+                            and search through existing Atom Beautify issues \
+                            before creating a new issue. \
+                            See #{issueSearchLink} for related Issues and \
+                            #{docsLink} for documentation. \
+                            If you are still unable to resolve this issue on \
+                            your own then please create a new issue and \
+                            ask for help.\n"
+        er.description = helpStr
+      else #if typeof help is "string"
+        er.description = help
+    return er
+
+
+  @_envCache = null
+  shellEnv: () ->
+    @constructor.shellEnv()
+  @shellEnv: () ->
+    if @_envCache
+      return Promise.resolve(@_envCache)
+    else
+      shellEnv()
+        .then((env) =>
+          @_envCache = env
+        )
+
+  ###
+  Like the unix which utility.
+
+  Finds the first instance of a specified executable in the PATH environment variable.
+  Does not cache the results,
+  so hash -r is not needed when the PATH changes.
+  See https://github.com/isaacs/node-which
+  ###
+  which: (exe, options) ->
+    @.constructor.which(exe, options)
+  @_whichCache = {}
+  @which: (exe, options = {}) ->
+    if @_whichCache[exe]
+      return Promise.resolve(@_whichCache[exe])
+    # Get PATH and other environment variables
+    @shellEnv()
+      .then((env) =>
+        new Promise((resolve, reject) =>
+          options.path ?= env.PATH
+          if @isWindows()
+            # Environment variables are case-insensitive in windows
+            # Check env for a case-insensitive 'path' variable
+            if !options.path
+              for i of env
+                if i.toLowerCase() is "path"
+                  options.path = env[i]
+                  break
+
+            # Trick node-which into including files
+            # with no extension as executables.
+            # Put empty extension last to allow for other real extensions first
+            options.pathExt ?= "#{process.env.PATHEXT ? '.EXE'};"
+          which(exe, options, (err, path) =>
+            return resolve(exe) if err
+            @_whichCache[exe] = path
+            resolve(path)
+          )
+        )
+      )
+
+  ###
+  If platform is Windows
+  ###
+  isWindows: () -> @constructor.isWindows()
+  @isWindows: () -> new RegExp('^win').test(process.platform)
+
+class HybridExecutable extends Executable
+
+  dockerOptions: {
+    image: undefined
+    workingDir: "/workdir"
+  }
+
+  constructor: (options) ->
+    super(options)
+    if options.docker?
+      @dockerOptions = Object.assign({}, @dockerOptions, options.docker)
+      @docker = @constructor.dockerExecutable()
+
+  @docker: undefined
+  @dockerExecutable: () ->
+    if not @docker?
+      @docker = new Executable({
+        name: "Docker"
+        cmd: "docker"
+        homepage: "https://www.docker.com/"
+        installation: "https://www.docker.com/get-docker"
+        version: {
+          parse: (text) -> text.match(/version [0]*([1-9]\d*).[0]*([1-9]\d*).[0]*([1-9]\d*)/).slice(1).join('.')
+        }
+      })
+    return @docker
+
+  installedWithDocker: false
+  init: () ->
+    super()
+      .catch((error) =>
+        return Promise.reject(error) if not @docker?
+        @docker.init()
+          .then(=> @runImage(@versionArgs, @versionRunOptions))
+          .then((text) => @saveVersion(text))
+          .then(() => @installedWithDocker = true)
+          .then(=> @)
+          .catch((dockerError) =>
+            @debug(dockerError)
+            Promise.reject(error)
+          )
+      )
+
+  run: (args, options = {}) ->
+    if @installedWithDocker and @docker and @docker.isInstalled
+      return @runImage(args, options)
+    super(args, options)
+
+  runImage: (args, options) ->
+    @debug("Run Docker executable: ", args, options)
+    this.resolveArgs(args)
+      .then((args) =>
+        { cwd } = options
+        tmpDir = os.tmpDir()
+        pwd = fs.realpathSync(cwd or tmpDir)
+        image = @dockerOptions.image
+        workingDir = @dockerOptions.workingDir
+
+        rootPath = '/mountedRoot'
+        newArgs = args.map((arg) ->
+          if (typeof arg is 'string' and not arg.includes(':') \
+            and path.isAbsolute(arg) and not path.dirname(arg).startsWith(tmpDir))
+            then path.join(rootPath, arg) else arg
+        )
+
+        @docker.run([
+            "run",
+            "--volume", "#{pwd}:#{workingDir}",
+            "--volume", "#{path.resolve('/')}:#{rootPath}",
+            "--workdir", workingDir,
+            image,
+            newArgs
+          ],
+          options
+        )
+      )
+
+
+module.exports = HybridExecutable

src/beautifiers/formatR/index.coffee

@@ -9,18 +9,33 @@ Beautifier = require('../beautifier')
 module.exports = class R extends Beautifier
   name: "formatR"
   link: "https://github.com/yihui/formatR"
-  isPreInstalled: false
+  executables: [
+    {
+      name: "Rscript"
+      cmd: "rscript"
+      homepage: "https://github.com/yihui/formatR"
+      installation: "https://github.com/yihui/formatR"
+      version: {
+        parse: (text) -> text.match(/version (\d+\.\d+\.\d+) /)[1]
+        runOptions: {
+          returnStderr: true
+        }
+      }
+      docker: {
+        image: "unibeautify/rscript"
+      }
+    }
+  ]
 
   options: {
     R: true
   }
 
   beautify: (text, language, options) ->
+    rscript = @exe("rscript")
     r_beautifier = path.resolve(__dirname, "formatR.r")
-    @run("Rscript", [
+    rscript.run([
       r_beautifier,
       options.indent_size,
       @tempFile("input", text),
-      '>',
-      @tempFile("input", text)
     ])

src/beautifiers/fortran-beautifier/index.coffee

@@ -9,7 +9,17 @@ path = require("path")
 module.exports = class FortranBeautifier extends Beautifier
   name: "Fortran Beautifier"
   link: "https://www.gnu.org/software/emacs/"
-  isPreInstalled: false
+  executables: [
+    {
+      name: "Emacs"
+      cmd: "emacs"
+      homepage: "https://www.gnu.org/software/emacs/"
+      installation: "https://www.gnu.org/software/emacs/"
+      version: {
+        parse: (text) -> text.match(/Emacs (\d+\.\d+\.\d+)/)[1]
+      }
+    }
+  ]
 
   options: {
     Fortran: true
@@ -17,6 +27,7 @@ module.exports = class FortranBeautifier extends Beautifier
 
   beautify: (text, language, options) ->
     @debug('fortran-beautifier', options)
+    emacs = @exe("emacs")
 
     emacs_path = options.emacs_path
     emacs_script_path = options.emacs_script_path
@@ -36,12 +47,13 @@ module.exports = class FortranBeautifier extends Beautifier
       ]
 
     if emacs_path
+      @deprecate("The \"emacs_path\" has been deprecated. Please switch to using the config with path \"Executables - Emacs - Path\" in Atom-Beautify package settings now.")
       @run(emacs_path, args, {ignoreReturnCode: false})
         .then(=>
           @readFile(tempFile)
         )
     else
-      @run("emacs", args, {ignoreReturnCode: false})
+      emacs.run(args, {ignoreReturnCode: false})
         .then(=>
           @readFile(tempFile)
         )

src/beautifiers/gherkin.coffee

@@ -3,8 +3,6 @@
 
 "use strict"
 Beautifier = require('./beautifier')
-Lexer = require('gherkin').Lexer('en')
-logger = require('../logger')(__filename)
 
 module.exports = class Gherkin extends Beautifier
   name: "Gherkin formatter"
@@ -15,6 +13,8 @@ module.exports = class Gherkin extends Beautifier
   }
 
   beautify: (text, language, options) ->
+    Lexer = require('gherkin').Lexer('en')
+    logger = @logger
     return new @Promise((resolve, reject) ->
       recorder = {
         lines: []

src/beautifiers/index.coffee

@@ -278,10 +278,11 @@ module.exports = class Beautifiers extends EventEmitter
     return Promise.all(allOptions)
     .then((allOptions) =>
       return new Promise((resolve, reject) =>
-        logger.info('beautify', text, allOptions, grammar, filePath, onSave, language)
+        logger.debug('beautify', text, allOptions, grammar, filePath, onSave, language)
         logger.verbose(allOptions)
 
         language ?= @getLanguage(grammar, filePath)
+        fileExtension = @getExtension(filePath)
 
         # Check if unsupported language
         if !language
@@ -343,9 +344,14 @@ module.exports = class Beautifiers extends EventEmitter
 
             context =
               filePath: filePath
+              fileExtension: fileExtension
 
             startTime = new Date()
+            beautifier.loadExecutables()
+              .then((executables) ->
+                logger.verbose('executables', executables)
                 beautifier.beautify(text, language.name, options, context)
+              )
               .then((result) =>
                 resolve(result)
                 # Track Timing
@@ -364,6 +370,7 @@ module.exports = class Beautifiers extends EventEmitter
                   })
               )
               .catch((error) =>
+                logger.error(error)
                 reject(error)
                 # Track Errors
                 @trackEvent({
@@ -400,7 +407,6 @@ module.exports = class Beautifiers extends EventEmitter
           if atom.config.get("atom-beautify.general.muteUnsupportedLanguageErrors")
             return resolve( null )
           else
-            fileExtension = @getExtension(filePath)
             repoBugsUrl = pkg.bugs.url
             title = "Atom Beautify could not find a supported beautifier for this file"
             detail = """

src/beautifiers/lua-beautifier/index.coffee

@@ -8,8 +8,7 @@ format = require './beautifier'
 
 module.exports = class Lua extends Beautifier
   name: "Lua beautifier"
-  link: "https://www.perl.org/"
+  link: "https://github.com/Glavin001/atom-beautify/blob/master/src/beautifiers/lua-beautifier/beautifier.coffee"
-  isPreInstalled: false
 
   options: {
     Lua: true

src/beautifiers/php-cs-fixer.coffee

@@ -10,7 +10,30 @@ module.exports = class PHPCSFixer extends Beautifier
 
   name: 'PHP-CS-Fixer'
   link: "https://github.com/FriendsOfPHP/PHP-CS-Fixer"
-  isPreInstalled: false
+  executables: [
+    {
+      name: "PHP"
+      cmd: "php"
+      homepage: "http://php.net/"
+      installation: "http://php.net/manual/en/install.php"
+      version: {
+        parse: (text) -> text.match(/PHP (.*) \(cli\)/)[1]
+      }
+    }
+    {
+      name: "PHP-CS-Fixer"
+      cmd: "php-cs-fixer"
+      homepage: "https://github.com/FriendsOfPHP/PHP-CS-Fixer"
+      installation: "https://github.com/FriendsOfPHP/PHP-CS-Fixer#installation"
+      version: {
+        parse: (text) -> text.match(/version (.*) by/)[1] + ".0"
+      }
+      docker: {
+        image: "unibeautify/php-cs-fixer"
+        workingDir: "/project"
+      }
+    }
+  ]
 
   options:
     PHP:
@@ -24,7 +47,8 @@ module.exports = class PHPCSFixer extends Beautifier
 
   beautify: (text, language, options, context) ->
     @debug('php-cs-fixer', options)
-    version = options.cs_fixer_version
+    php = @exe('php')
+    phpCsFixer = @exe('php-cs-fixer')
     configFiles = ['.php_cs', '.php_cs.dist']
 
     # Find a config file in the working directory if a custom one was not provided
@@ -42,7 +66,7 @@ module.exports = class PHPCSFixer extends Beautifier
       "--allow-risky=#{options.allow_risky}" if options.allow_risky
       "--using-cache=no"
     ]
-    if version is 1
+    if phpCsFixer.isVersion('1.x')
       phpCsFixerOptions = [
         "fix"
         "--level=#{options.level}" if options.level
@@ -57,10 +81,15 @@ module.exports = class PHPCSFixer extends Beautifier
     }
 
     # Find php-cs-fixer.phar script
+    if options.cs_fixer_path
+      @deprecate("The \"cs_fixer_path\" has been deprecated. Please switch to using the config with path \"Executables - PHP-CS-Fixer - Path\" in Atom-Beautify package settings now.")
+
     @Promise.all([
       @which(options.cs_fixer_path) if options.cs_fixer_path
       @which('php-cs-fixer')
-    ]).then((paths) =>
+      tempFile = @tempFile("temp", text, '.php')
+    ]).then(([customPath, phpCsFixerPath]) =>
+      paths = [customPath, phpCsFixerPath]
       @debug('php-cs-fixer paths', paths)
       _ = require 'lodash'
       # Get first valid, absolute path
@@ -71,10 +100,8 @@ module.exports = class PHPCSFixer extends Beautifier
       # Check if PHP-CS-Fixer path was found
       if phpCSFixerPath?
         # Found PHP-CS-Fixer path
-        tempFile = @tempFile("temp", text)
-
         if @isWindows
-          @run("php", [phpCSFixerPath, phpCsFixerOptions, tempFile], runOptions)
+          php.run([phpCSFixerPath, phpCsFixerOptions, tempFile], runOptions)
             .then(=>
               @readFile(tempFile)
             )

src/beautifiers/phpcbf.coffee

@@ -8,6 +8,20 @@ Beautifier = require('./beautifier')
 module.exports = class PHPCBF extends Beautifier
   name: "PHPCBF"
   link: "http://php.net/manual/en/install.php"
+  executables: [
+    {
+      name: "PHPCBF"
+      cmd: "phpcbf"
+      homepage: "https://github.com/squizlabs/PHP_CodeSniffer"
+      installation: "https://github.com/squizlabs/PHP_CodeSniffer#installation"
+      version: {
+        args: ['--version']
+      }
+      docker: {
+        image: "unibeautify/phpcbf"
+      }
+    }
+  ]
   isPreInstalled: false
 
   options: {

src/beautifiers/sass-convert.coffee

@@ -4,7 +4,20 @@ Beautifier = require('./beautifier')
 module.exports = class SassConvert extends Beautifier
   name: "SassConvert"
   link: "http://sass-lang.com/documentation/file.SASS_REFERENCE.html#syntax"
-  isPreInstalled: false
+  executables: [
+    {
+      name: "SassConvert"
+      cmd: "sass-convert"
+      homepage: "http://sass-lang.com/documentation/file.SASS_REFERENCE.html#syntax"
+      installation: "http://sass-lang.com/documentation/file.SASS_REFERENCE.html#syntax"
+      version: {
+        parse: (text) -> text.match(/Sass (\d+\.\d+\.\d+)/)[1]
+      }
+      docker: {
+        image: "unibeautify/sass-convert"
+      }
+    }
+  ]
 
   options:
     # TODO: Add support for options
@@ -14,8 +27,7 @@ module.exports = class SassConvert extends Beautifier
 
   beautify: (text, language, options, context) ->
     lang = language.toLowerCase()
-
+    @exe("sass-convert").run([
-    @run("sass-convert", [
       @tempFile("input", text),
       "--from", lang, "--to", lang
     ])

src/beautifiers/uncrustify/index.coffee

@@ -11,7 +11,27 @@ _ = require('lodash')
 module.exports = class Uncrustify extends Beautifier
   name: "Uncrustify"
   link: "https://github.com/uncrustify/uncrustify"
-  isPreInstalled: false
+  executables: [
+    {
+      name: "Uncrustify"
+      cmd: "uncrustify"
+      homepage: "http://uncrustify.sourceforge.net/"
+      installation: "https://github.com/uncrustify/uncrustify"
+      version: {
+        parse: (text) ->
+          try
+            v = text.match(/uncrustify (\d+\.\d+)/)[1]
+          catch error
+            @error(error)
+            v = text.match(/Uncrustify-(\d+\.\d+)/)[1] if not v?
+          if v
+            return v + ".0"
+      }
+      docker: {
+        image: "unibeautify/uncrustify"
+      }
+    }
+  ]
 
   options: {
     Apex: true
@@ -26,7 +46,10 @@ module.exports = class Uncrustify extends Beautifier
     Arduino: true
   }
 
-  beautify: (text, language, options) ->
+  beautify: (text, language, options, context) ->
+    fileExtension = context.fileExtension
+
+    uncrustify = @exe("uncrustify")
     # console.log('uncrustify.beautify', language, options)
     return new @Promise((resolve, reject) ->
       configPath = options.configPath
@@ -50,8 +73,6 @@ module.exports = class Uncrustify extends Beautifier
           reject(new Error("No Uncrustify Config Path set! Please configure Uncrustify with Atom Beautify."))
     )
     .then((configPath) =>
-
-
       # Select Uncrustify language
       lang = "C" # Default is C
       switch language
@@ -76,18 +97,16 @@ module.exports = class Uncrustify extends Beautifier
         when "Arduino"
           lang = "CPP"
 
-      @run("uncrustify", [
+      uncrustify.run([
         "-c"
         configPath
         "-f"
-        @tempFile("input", text)
+        @tempFile("input", text, fileExtension and ".#{fileExtension}")
         "-o"
-        outputFile = @tempFile("output", text)
+        outputFile = @tempFile("output", text, fileExtension and ".#{fileExtension}")
         "-l"
         lang
-        ], help: {
+        ])
-          link: "http://sourceforge.net/projects/uncrustify/"
-        })
         .then(=>
           @readFile(outputFile)
         )

src/config.coffee

@@ -3,7 +3,7 @@ module.exports = {
     title: 'General'
     type: 'object'
     collapsed: true
-    order: -1
+    order: -2
     description: 'General options for Atom Beautify'
     properties:
       _analyticsUserId :

src/languages/css.coffee

@@ -78,13 +78,13 @@ module.exports = {
     no_lead_zero:
       type: 'boolean'
       default: false
-      description: "If in CSS values leading 0s immediately preceeding \
+      description: "If in CSS values leading 0s immediately preceding \
                 a decimal should be removed or prevented."
     configPath:
       title: "comb custom config file"
       type: 'string'
       default: ""
-      description: "Path to custom CSScomb config file, used in absense of a \
+      description: "Path to custom CSScomb config file, used in absence of a \
                 `.csscomb.json` or `.csscomb.cson` at the root of your project."
     predefinedConfig:
       title: "comb predefined config"

src/languages/latex.coffee

@@ -44,7 +44,7 @@ module.exports = {
     indent_preamble:
       type: 'boolean'
       default: false
-      description: "Indent the preable"
+      description: "Indent the preamble"
     always_look_for_split_braces:
       type: 'boolean'
       default: true
@@ -60,5 +60,5 @@ module.exports = {
     align_columns_in_environments:
       type: 'array'
       default:["tabular", "matrix", "bmatrix", "pmatrix"]
-      decription: "Aligns columns by the alignment tabs for environments specified"
+      description: "Aligns columns by the alignment tabs for environments specified"
 }

src/languages/nginx.coffee

@@ -38,5 +38,5 @@ module.exports = {
       title: "Don't join curly brackets"
       type: "boolean"
       default: true
-      descriotion: ""
+      description: ""
 }

src/languages/python.coffee

@@ -38,7 +38,7 @@ module.exports = {
       type: 'string'
       default: 'autopep8'
       enum: ['autopep8', 'yapf']
-      description: "formater used by pybeautifier"
+      description: "formatter used by pybeautifier"
     style_config:
       type: 'string'
       default: 'pep8'

src/options.json

@@ -1072,7 +1072,7 @@
       "no_lead_zero": {
         "type": "boolean",
         "default": false,
-        "description": "If in CSS values leading 0s immediately preceeding a decimal should be removed or prevented. (Supported by Pretty Diff)",
+        "description": "If in CSS values leading 0s immediately preceding a decimal should be removed or prevented. (Supported by Pretty Diff)",
         "title": "No lead zero",
         "beautifiers": [
           "Pretty Diff"
@@ -1087,7 +1087,7 @@
         "title": "comb custom config file",
         "type": "string",
         "default": "",
-        "description": "Path to custom CSScomb config file, used in absense of a `.csscomb.json` or `.csscomb.cson` at the root of your project. (Supported by CSScomb)",
+        "description": "Path to custom CSScomb config file, used in absence of a `.csscomb.json` or `.csscomb.cson` at the root of your project. (Supported by CSScomb)",
         "beautifiers": [
           "CSScomb"
         ],
@@ -4239,7 +4239,7 @@
       "indent_preamble": {
         "type": "boolean",
         "default": false,
-        "description": "Indent the preable (Supported by Latex Beautify)",
+        "description": "Indent the preamble (Supported by Latex Beautify)",
         "title": "Indent preamble",
         "beautifiers": [
           "Latex Beautify"
@@ -4300,7 +4300,7 @@
           "bmatrix",
           "pmatrix"
         ],
-        "decription": "Aligns columns by the alignment tabs for environments specified",
+        "description": "Aligns columns by the alignment tabs for environments specified (Supported by Latex Beautify)",
         "title": "Align columns in environments",
         "beautifiers": [
           "Latex Beautify"
@@ -4309,8 +4309,7 @@
         "language": {
           "name": "LaTeX",
           "namespace": "latex"
-        },
+        }
-        "description": " (Supported by Latex Beautify)"
       },
       "disabled": {
         "title": "Disable Beautifying Language",
@@ -4490,7 +4489,7 @@
       "no_lead_zero": {
         "type": "boolean",
         "default": false,
-        "description": "If in CSS values leading 0s immediately preceeding a decimal should be removed or prevented. (Supported by Pretty Diff)",
+        "description": "If in CSS values leading 0s immediately preceding a decimal should be removed or prevented. (Supported by Pretty Diff)",
         "title": "No lead zero",
         "beautifiers": [
           "Pretty Diff"
@@ -4505,7 +4504,7 @@
         "title": "comb custom config file",
         "type": "string",
         "default": "",
-        "description": "Path to custom CSScomb config file, used in absense of a `.csscomb.json` or `.csscomb.cson` at the root of your project. (Supported by CSScomb)",
+        "description": "Path to custom CSScomb config file, used in absence of a `.csscomb.json` or `.csscomb.cson` at the root of your project. (Supported by CSScomb)",
         "beautifiers": [
           "CSScomb"
         ],
@@ -5439,7 +5438,7 @@
         "title": "Don't join curly brackets",
         "type": "boolean",
         "default": true,
-        "descriotion": "",
+        "description": " (Supported by Nginx Beautify)",
         "beautifiers": [
           "Nginx Beautify"
         ],
@@ -5447,8 +5446,7 @@
         "language": {
           "name": "Nginx",
           "namespace": "nginx"
-        },
+        }
-        "description": " (Supported by Nginx Beautify)"
       },
       "disabled": {
         "title": "Disable Beautifying Language",
@@ -6110,7 +6108,7 @@
           "autopep8",
           "yapf"
         ],
-        "description": "formater used by pybeautifier (Supported by autopep8, pybeautifier)",
+        "description": "formatter used by pybeautifier (Supported by autopep8, pybeautifier)",
         "title": "Formater",
         "beautifiers": [
           "autopep8",
@@ -6707,7 +6705,7 @@
       "no_lead_zero": {
         "type": "boolean",
         "default": false,
-        "description": "If in CSS values leading 0s immediately preceeding a decimal should be removed or prevented. (Supported by Pretty Diff)",
+        "description": "If in CSS values leading 0s immediately preceding a decimal should be removed or prevented. (Supported by Pretty Diff)",
         "title": "No lead zero",
         "beautifiers": [
           "Pretty Diff"
@@ -6722,7 +6720,7 @@
         "title": "comb custom config file",
         "type": "string",
         "default": "",
-        "description": "Path to custom CSScomb config file, used in absense of a `.csscomb.json` or `.csscomb.cson` at the root of your project. (Supported by CSScomb)",
+        "description": "Path to custom CSScomb config file, used in absence of a `.csscomb.json` or `.csscomb.cson` at the root of your project. (Supported by CSScomb)",
         "beautifiers": [
           "CSScomb"
         ],
@@ -7323,7 +7321,7 @@
       "no_lead_zero": {
         "type": "boolean",
         "default": false,
-        "description": "If in CSS values leading 0s immediately preceeding a decimal should be removed or prevented. (Supported by Pretty Diff)",
+        "description": "If in CSS values leading 0s immediately preceding a decimal should be removed or prevented. (Supported by Pretty Diff)",
         "title": "No lead zero",
         "beautifiers": [
           "Pretty Diff"
@@ -9122,5 +9120,238 @@
         "description": "Automatically beautify YAML files on save"
       }
     }
+  },
+  "executables": {
+    "title": "Executables",
+    "type": "object",
+    "collapsed": true,
+    "order": -1,
+    "description": "Configure executables used by beautifiers.",
+    "properties": {
+      "uncrustify": {
+        "key": "uncrustify",
+        "title": "Uncrustify",
+        "type": "object",
+        "collapsed": true,
+        "description": "Options for Uncrustify executable.",
+        "properties": {
+          "path": {
+            "key": "path",
+            "title": "Binary/Script Path",
+            "type": "string",
+            "default": "",
+            "description": "Absolute path to the \"uncrustify\" executable's binary/script."
+          }
+        }
+      },
+      "autopep8": {
+        "key": "autopep8",
+        "title": "autopep8",
+        "type": "object",
+        "collapsed": true,
+        "description": "Options for autopep8 executable.",
+        "properties": {
+          "path": {
+            "key": "path",
+            "title": "Binary/Script Path",
+            "type": "string",
+            "default": "",
+            "description": "Absolute path to the \"autopep8\" executable's binary/script."
+          }
+        }
+      },
+      "isort": {
+        "key": "isort",
+        "title": "isort",
+        "type": "object",
+        "collapsed": true,
+        "description": "Options for isort executable.",
+        "properties": {
+          "path": {
+            "key": "path",
+            "title": "Binary/Script Path",
+            "type": "string",
+            "default": "",
+            "description": "Absolute path to the \"isort\" executable's binary/script."
+          }
+        }
+      },
+      "clang-format": {
+        "key": "clang-format",
+        "title": "ClangFormat",
+        "type": "object",
+        "collapsed": true,
+        "description": "Options for ClangFormat executable.",
+        "properties": {
+          "path": {
+            "key": "path",
+            "title": "Binary/Script Path",
+            "type": "string",
+            "default": "",
+            "description": "Absolute path to the \"clang-format\" executable's binary/script."
+          }
+        }
+      },
+      "crystal": {
+        "key": "crystal",
+        "title": "Crystal",
+        "type": "object",
+        "collapsed": true,
+        "description": "Options for Crystal executable.",
+        "properties": {
+          "path": {
+            "key": "path",
+            "title": "Binary/Script Path",
+            "type": "string",
+            "default": "",
+            "description": "Absolute path to the \"crystal\" executable's binary/script."
+          }
+        }
+      },
+      "dfmt": {
+        "key": "dfmt",
+        "title": "Dfmt",
+        "type": "object",
+        "collapsed": true,
+        "description": "Options for Dfmt executable.",
+        "properties": {
+          "path": {
+            "key": "path",
+            "title": "Binary/Script Path",
+            "type": "string",
+            "default": "",
+            "description": "Absolute path to the \"dfmt\" executable's binary/script."
+          }
+        }
+      },
+      "elm-format": {
+        "key": "elm-format",
+        "title": "elm-format",
+        "type": "object",
+        "collapsed": true,
+        "description": "Options for elm-format executable.",
+        "properties": {
+          "path": {
+            "key": "path",
+            "title": "Binary/Script Path",
+            "type": "string",
+            "default": "",
+            "description": "Absolute path to the \"elm-format\" executable's binary/script."
+          }
+        }
+      },
+      "emacs": {
+        "key": "emacs",
+        "title": "Emacs",
+        "type": "object",
+        "collapsed": true,
+        "description": "Options for Emacs executable.",
+        "properties": {
+          "path": {
+            "key": "path",
+            "title": "Binary/Script Path",
+            "type": "string",
+            "default": "",
+            "description": "Absolute path to the \"emacs\" executable's binary/script."
+          }
+        }
+      },
+      "php": {
+        "key": "php",
+        "title": "PHP",
+        "type": "object",
+        "collapsed": true,
+        "description": "Options for PHP executable.",
+        "properties": {
+          "path": {
+            "key": "path",
+            "title": "Binary/Script Path",
+            "type": "string",
+            "default": "",
+            "description": "Absolute path to the \"php\" executable's binary/script."
+          }
+        }
+      },
+      "php-cs-fixer": {
+        "key": "php-cs-fixer",
+        "title": "PHP-CS-Fixer",
+        "type": "object",
+        "collapsed": true,
+        "description": "Options for PHP-CS-Fixer executable.",
+        "properties": {
+          "path": {
+            "key": "path",
+            "title": "Binary/Script Path",
+            "type": "string",
+            "default": "",
+            "description": "Absolute path to the \"php-cs-fixer\" executable's binary/script."
+          }
+        }
+      },
+      "phpcbf": {
+        "key": "phpcbf",
+        "title": "PHPCBF",
+        "type": "object",
+        "collapsed": true,
+        "description": "Options for PHPCBF executable.",
+        "properties": {
+          "path": {
+            "key": "path",
+            "title": "Binary/Script Path",
+            "type": "string",
+            "default": "",
+            "description": "Absolute path to the \"phpcbf\" executable's binary/script."
+          }
+        }
+      },
+      "sass-convert": {
+        "key": "sass-convert",
+        "title": "SassConvert",
+        "type": "object",
+        "collapsed": true,
+        "description": "Options for SassConvert executable.",
+        "properties": {
+          "path": {
+            "key": "path",
+            "title": "Binary/Script Path",
+            "type": "string",
+            "default": "",
+            "description": "Absolute path to the \"sass-convert\" executable's binary/script."
+          }
+        }
+      },
+      "rscript": {
+        "key": "rscript",
+        "title": "Rscript",
+        "type": "object",
+        "collapsed": true,
+        "description": "Options for Rscript executable.",
+        "properties": {
+          "path": {
+            "key": "path",
+            "title": "Binary/Script Path",
+            "type": "string",
+            "default": "",
+            "description": "Absolute path to the \"rscript\" executable's binary/script."
+          }
+        }
+      },
+      "beautysh": {
+        "key": "beautysh",
+        "title": "beautysh",
+        "type": "object",
+        "collapsed": true,
+        "description": "Options for beautysh executable.",
+        "properties": {
+          "path": {
+            "key": "path",
+            "title": "Binary/Script Path",
+            "type": "string",
+            "default": "",
+            "description": "Absolute path to the \"beautysh\" executable's binary/script."
+          }
+        }
+      }
+    }
   }
 }