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cleaned up some ancient dependencies.

This commit is contained in:
Jason Kulatunga 2023-01-26 02:03:45 -08:00
parent 47feec7a6a
commit 0a5dd6af5a
4 changed files with 51 additions and 314 deletions
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1
frontend/package.json
View File

@ -33,7 +33,6 @@
"@swimlane/ngx-datatable": "^20.0.0", "@swimlane/ngx-datatable": "^20.0.0",
"bootstrap": "^4.4.1", "bootstrap": "^4.4.1",
"chart.js": "2.9.4", "chart.js": "2.9.4",
"fhirclient": "^2.5.1",
"fhirpath": "^3.3.0", "fhirpath": "^3.3.0",
"fuse.js": "^6.6.2", "fuse.js": "^6.6.2",
"humanize-duration": "^3.27.3", "humanize-duration": "^3.27.3",

49
frontend/src/app/pages/medical-sources/medical-sources.component.ts
View File

@ -3,8 +3,6 @@ import {LighthouseService} from '../../services/lighthouse.service';
import {FastenApiService} from '../../services/fasten-api.service'; import {FastenApiService} from '../../services/fasten-api.service';
import {LighthouseSourceMetadata} from '../../models/lighthouse/lighthouse-source-metadata'; import {LighthouseSourceMetadata} from '../../models/lighthouse/lighthouse-source-metadata';
import {Source} from '../../models/fasten/source'; import {Source} from '../../models/fasten/source';
import {getAccessTokenExpiration, jwtDecode} from 'fhirclient/lib/lib';
import BrowserAdapter from 'fhirclient/lib/adapters/BrowserAdapter';
import {MetadataSource} from '../../models/fasten/metadata-source'; import {MetadataSource} from '../../models/fasten/metadata-source';
import {ModalDismissReasons, NgbModal} from '@ng-bootstrap/ng-bootstrap'; import {ModalDismissReasons, NgbModal} from '@ng-bootstrap/ng-bootstrap';
import {ActivatedRoute, Router} from '@angular/router'; import {ActivatedRoute, Router} from '@angular/router';
@ -224,7 +222,7 @@ export class MedicalSourcesComponent implements OnInit {
console.log("NO PATIENT ID present, decoding jwt to extract patient") console.log("NO PATIENT ID present, decoding jwt to extract patient")
//const introspectionResp = await Oauth.introspectionRequest(as, client, payload.access_token) //const introspectionResp = await Oauth.introspectionRequest(as, client, payload.access_token)
//console.log(introspectionResp) //console.log(introspectionResp)
payload.patient = jwtDecode(payload.id_token, new BrowserAdapter())["profile"].replace(/^(Patient\/)/,'') payload.patient = this.jwtDecode(payload.id_token)["profile"].replace(/^(Patient\/)/,'')
} }
@ -256,7 +254,7 @@ export class MedicalSourcesComponent implements OnInit {
id_token: payload.id_token, id_token: payload.id_token,
// @ts-ignore - in some cases the getAccessTokenExpiration is a string, which cases failures to store Source in db. // @ts-ignore - in some cases the getAccessTokenExpiration is a string, which cases failures to store Source in db.
expires_at: parseInt(getAccessTokenExpiration(payload, new BrowserAdapter())), expires_at: parseInt(this.getAccessTokenExpiration(payload)),
}) })
this.fastenApi.createSource(dbSourceCredential) this.fastenApi.createSource(dbSourceCredential)
@ -376,4 +374,47 @@ export class MedicalSourcesComponent implements OnInit {
} }
} }
/**
* https://github.com/smart-on-fhir/client-js/blob/8f64b770dbcd0abd30646e239cd446dfa4d831f6/src/lib.ts#L311
* Decodes a JWT token and returns it's body.
* @param token The token to read
* @param env An `Adapter` or any other object that has an `atob` method
* @category Utility
*/
private jwtDecode(token: string): Record<string, any> | null
{
const payload = token.split(".")[1];
return payload ? JSON.parse(atob(payload)) : null;
}
/**
* https://github.com/smart-on-fhir/client-js/blob/8f64b770dbcd0abd30646e239cd446dfa4d831f6/src/lib.ts#L334
* Given a token response, computes and returns the expiresAt timestamp.
* Note that this should only be used immediately after an access token is
* received, otherwise the computed timestamp will be incorrect.
* @param tokenResponse
* @param env
*/
private getAccessTokenExpiration(tokenResponse: any): number
{
const now = Math.floor(Date.now() / 1000);
// Option 1 - using the expires_in property of the token response
if (tokenResponse.expires_in) {
return now + tokenResponse.expires_in;
}
// Option 2 - using the exp property of JWT tokens (must not assume JWT!)
if (tokenResponse.access_token) {
let tokenBody = this.jwtDecode(tokenResponse.access_token);
if (tokenBody && tokenBody['exp']) {
return tokenBody['exp'];
}
}
// Option 3 - if none of the above worked set this to 5 minutes after now
return now + 300;
}
} }

2
frontend/tsconfig.app.json
View File

@ -1,7 +1,7 @@
{ {
"extends": "./tsconfig.json", "extends": "./tsconfig.json",
"compilerOptions": { "compilerOptions": {
"skipLibCheck": true, //this is because fhirclient types.d.ts file includes reference to "http" (Node) library // "skipLibCheck": false,
//TODO open an upstream issue: Cannot find module 'http' or its corresponding type declarations. //TODO open an upstream issue: Cannot find module 'http' or its corresponding type declarations.
"outDir": "./out-tsc/app", "outDir": "./out-tsc/app",

313
frontend/yarn.lock
View File

@ -1593,33 +1593,6 @@
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@ -1838,21 +1811,6 @@
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@ -2251,15 +2199,6 @@ asn1@~0.2.3:
dependencies: dependencies:
safer-buffer "~2.1.0" safer-buffer "~2.1.0"
asn1js@^3.0.1, asn1js@^3.0.5:
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@ -2947,11 +2852,6 @@ core-js-compat@^3.21.0, core-js-compat@^3.22.1:
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@ -2993,13 +2893,6 @@ critters@0.0.16:
postcss "^8.3.7" postcss "^8.3.7"
pretty-bytes "^5.3.0" pretty-bytes "^5.3.0"
cross-fetch@^3.0.5:
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resolved "https://registry.npmjs.org/cross-fetch/-/cross-fetch-3.1.5.tgz#e1389f44d9e7ba767907f7af8454787952ab534f"
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dependencies:
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cross-spawn@^7.0.3: cross-spawn@^7.0.3:
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@ -3631,24 +3524,6 @@ exit@^0.1.2:
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commander "^7.2.0"
fast-glob "^3.2.5"
find-up "~5.0.0"
fs-extra "^9.1.0"
expo-random@*:
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express@^4.17.3: express@^4.17.3:
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@ -3715,7 +3590,7 @@ fast-deep-equal@^3.1.1, fast-deep-equal@^3.1.3:
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@ -3750,19 +3625,6 @@ faye-websocket@^0.11.3:
dependencies: dependencies:
websocket-driver ">=0.5.1" websocket-driver ">=0.5.1"
fhirclient@^2.5.1:
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resolved "https://registry.npmjs.org/fhirclient/-/fhirclient-2.5.2.tgz#68d73349da8d299be32f5499be165026ac818e91"
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dependencies:
abortcontroller-polyfill "^1.5.0"
core-js "^3.23.4"
cross-fetch "^3.0.5"
debug "^4.1.1"
isomorphic-webcrypto "^2.3.8"
jose "^4.6.0"
js-base64 "^3.7.2"
fhirpath@^3.3.0: fhirpath@^3.3.0:
version "3.3.1" version "3.3.1"
resolved "https://registry.npmjs.org/fhirpath/-/fhirpath-3.3.1.tgz#cda17acd62243e3dac24e4b54f65dd5a37fee937" resolved "https://registry.npmjs.org/fhirpath/-/fhirpath-3.3.1.tgz#cda17acd62243e3dac24e4b54f65dd5a37fee937"
@ -3831,14 +3693,6 @@ find-up@^4.0.0, find-up@^4.1.0:
locate-path "^5.0.0" locate-path "^5.0.0"
path-exists "^4.0.0" path-exists "^4.0.0"
find-up@~5.0.0:
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resolved "https://registry.npmjs.org/find-up/-/find-up-5.0.0.tgz#4c92819ecb7083561e4f4a240a86be5198f536fc"
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dependencies:
locate-path "^6.0.0"
path-exists "^4.0.0"
flatted@^3.2.7: flatted@^3.2.7:
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resolved "https://registry.npmjs.org/flatted/-/flatted-3.2.7.tgz#609f39207cb614b89d0765b477cb2d437fbf9787" resolved "https://registry.npmjs.org/flatted/-/flatted-3.2.7.tgz#609f39207cb614b89d0765b477cb2d437fbf9787"
@ -3887,16 +3741,6 @@ fs-extra@^8.1.0:
jsonfile "^4.0.0" jsonfile "^4.0.0"
universalify "^0.1.0" universalify "^0.1.0"
fs-extra@^9.1.0:
version "9.1.0"
resolved "https://registry.npmjs.org/fs-extra/-/fs-extra-9.1.0.tgz#5954460c764a8da2094ba3554bf839e6b9a7c86d"
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dependencies:
at-least-node "^1.0.0"
graceful-fs "^4.2.0"
jsonfile "^6.0.1"
universalify "^2.0.0"
fs-minipass@^2.0.0, fs-minipass@^2.1.0: fs-minipass@^2.0.0, fs-minipass@^2.1.0:
version "2.1.0" version "2.1.0"
resolved "https://registry.npmjs.org/fs-minipass/-/fs-minipass-2.1.0.tgz#7f5036fdbf12c63c169190cbe4199c852271f9fb" resolved "https://registry.npmjs.org/fs-minipass/-/fs-minipass-2.1.0.tgz#7f5036fdbf12c63c169190cbe4199c852271f9fb"
@ -4403,13 +4247,6 @@ inquirer@8.2.4:
through "^2.3.6" through "^2.3.6"
wrap-ansi "^7.0.0" wrap-ansi "^7.0.0"
invariant@^2.2.4:
version "2.2.4"
resolved "https://registry.npmjs.org/invariant/-/invariant-2.2.4.tgz#610f3c92c9359ce1db616e538008d23ff35158e6"
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dependencies:
loose-envify "^1.0.0"
ip@^2.0.0: ip@^2.0.0:
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resolved "https://registry.npmjs.org/ip/-/ip-2.0.0.tgz#4cf4ab182fee2314c75ede1276f8c80b479936da" resolved "https://registry.npmjs.org/ip/-/ip-2.0.0.tgz#4cf4ab182fee2314c75ede1276f8c80b479936da"
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isomorphic-webcrypto@^2.3.8:
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resolved "https://registry.npmjs.org/isomorphic-webcrypto/-/isomorphic-webcrypto-2.3.8.tgz#4a7493b486ef072b9f11b6f8fd66adde856e3eec"
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dependencies:
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asmcrypto.js "^0.22.0"
b64-lite "^1.3.1"
b64u-lite "^1.0.1"
msrcrypto "^1.5.6"
str2buf "^1.3.0"
webcrypto-shim "^0.1.4"
optionalDependencies:
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"@unimodules/react-native-adapter" "*"
expo-random "*"
react-native-securerandom "^0.1.1"
isstream@~0.1.2: isstream@~0.1.2:
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resolved "https://registry.npmjs.org/isstream/-/isstream-0.1.2.tgz#47e63f7af55afa6f92e1500e690eb8b8529c099a" resolved "https://registry.npmjs.org/isstream/-/isstream-0.1.2.tgz#47e63f7af55afa6f92e1500e690eb8b8529c099a"
@ -4697,17 +4516,12 @@ jest-worker@^27.4.5:
merge-stream "^2.0.0" merge-stream "^2.0.0"
supports-color "^8.0.0" supports-color "^8.0.0"
jose@^4.10.4, jose@^4.6.0: jose@^4.10.4:
version "4.11.2" version "4.11.2"
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js-base64@^3.7.2: js-tokens@^4.0.0:
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resolved "https://registry.npmjs.org/js-tokens/-/js-tokens-4.0.0.tgz#19203fb59991df98e3a287050d4647cdeaf32499" resolved "https://registry.npmjs.org/js-tokens/-/js-tokens-4.0.0.tgz#19203fb59991df98e3a287050d4647cdeaf32499"
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@ -4784,15 +4598,6 @@ jsonfile@^4.0.0:
optionalDependencies: optionalDependencies:
graceful-fs "^4.1.6" graceful-fs "^4.1.6"
jsonfile@^6.0.1:
version "6.1.0"
resolved "https://registry.npmjs.org/jsonfile/-/jsonfile-6.1.0.tgz#bc55b2634793c679ec6403094eb13698a6ec0aae"
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dependencies:
universalify "^2.0.0"
optionalDependencies:
graceful-fs "^4.1.6"
jsonparse@^1.3.1: jsonparse@^1.3.1:
version "1.3.1" version "1.3.1"
resolved "https://registry.npmjs.org/jsonparse/-/jsonparse-1.3.1.tgz#3f4dae4a91fac315f71062f8521cc239f1366280" resolved "https://registry.npmjs.org/jsonparse/-/jsonparse-1.3.1.tgz#3f4dae4a91fac315f71062f8521cc239f1366280"
@ -4976,13 +4781,6 @@ locate-path@^5.0.0:
dependencies: dependencies:
p-locate "^4.1.0" p-locate "^4.1.0"
locate-path@^6.0.0:
version "6.0.0"
resolved "https://registry.npmjs.org/locate-path/-/locate-path-6.0.0.tgz#55321eb309febbc59c4801d931a72452a681d286"
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dependencies:
p-locate "^5.0.0"
lodash-es@^4.17.15: lodash-es@^4.17.15:
version "4.17.21" version "4.17.21"
resolved "https://registry.npmjs.org/lodash-es/-/lodash-es-4.17.21.tgz#43e626c46e6591b7750beb2b50117390c609e3ee" resolved "https://registry.npmjs.org/lodash-es/-/lodash-es-4.17.21.tgz#43e626c46e6591b7750beb2b50117390c609e3ee"
@ -5022,13 +4820,6 @@ log4js@^6.4.1:
rfdc "^1.3.0" rfdc "^1.3.0"
streamroller "^3.1.3" streamroller "^3.1.3"
loose-envify@^1.0.0:
version "1.4.0"
resolved "https://registry.npmjs.org/loose-envify/-/loose-envify-1.4.0.tgz#71ee51fa7be4caec1a63839f7e682d8132d30caf"
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dependencies:
js-tokens "^3.0.0 || ^4.0.0"
lru-cache@^5.1.1: lru-cache@^5.1.1:
version "5.1.1" version "5.1.1"
resolved "https://registry.npmjs.org/lru-cache/-/lru-cache-5.1.1.tgz#1da27e6710271947695daf6848e847f01d84b920" resolved "https://registry.npmjs.org/lru-cache/-/lru-cache-5.1.1.tgz#1da27e6710271947695daf6848e847f01d84b920"
@ -5315,11 +5106,6 @@ ms@2.1.3, ms@^2.0.0, ms@^2.1.1:
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msrcrypto@^1.5.6:
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resolved "https://registry.npmjs.org/msrcrypto/-/msrcrypto-1.5.8.tgz#be419be4945bf134d8af52e9d43be7fa261f4a1c"
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multicast-dns@^7.2.5: multicast-dns@^7.2.5:
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resolved "https://registry.npmjs.org/multicast-dns/-/multicast-dns-7.2.5.tgz#77eb46057f4d7adbd16d9290fa7299f6fa64cced" resolved "https://registry.npmjs.org/multicast-dns/-/multicast-dns-7.2.5.tgz#77eb46057f4d7adbd16d9290fa7299f6fa64cced"
@ -5402,13 +5188,6 @@ node-addon-api@^3.0.0:
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node-fetch@2.6.7:
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resolved "https://registry.npmjs.org/node-fetch/-/node-fetch-2.6.7.tgz#24de9fba827e3b4ae44dc8b20256a379160052ad"
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dependencies:
whatwg-url "^5.0.0"
node-forge@^1: node-forge@^1:
version "1.3.1" version "1.3.1"
resolved "https://registry.npmjs.org/node-forge/-/node-forge-1.3.1.tgz#be8da2af243b2417d5f646a770663a92b7e9ded3" resolved "https://registry.npmjs.org/node-forge/-/node-forge-1.3.1.tgz#be8da2af243b2417d5f646a770663a92b7e9ded3"
@ -5674,13 +5453,6 @@ p-limit@^2.2.0:
dependencies: dependencies:
p-try "^2.0.0" p-try "^2.0.0"
p-limit@^3.0.2:
version "3.1.0"
resolved "https://registry.npmjs.org/p-limit/-/p-limit-3.1.0.tgz#e1daccbe78d0d1388ca18c64fea38e3e57e3706b"
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dependencies:
yocto-queue "^0.1.0"
p-locate@^4.1.0: p-locate@^4.1.0:
version "4.1.0" version "4.1.0"
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@ -5688,13 +5460,6 @@ p-locate@^4.1.0:
dependencies: dependencies:
p-limit "^2.2.0" p-limit "^2.2.0"
p-locate@^5.0.0:
version "5.0.0"
resolved "https://registry.npmjs.org/p-locate/-/p-locate-5.0.0.tgz#83c8315c6785005e3bd021839411c9e110e6d834"
integrity sha512-LaNjtRWUBY++zB5nE/NwcaoMylSPk+S+ZHNB1TzdbMJMny6dynpAGt7X/tl/QYq3TIeE6nxHppbo2LGymrG5Pw==
dependencies:
p-limit "^3.0.2"
p-map@^4.0.0: p-map@^4.0.0:
version "4.0.0" version "4.0.0"
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psl "^1.1.28" psl "^1.1.28"
punycode "^2.1.1" punycode "^2.1.1"
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dependencies:
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xml2js "^0.4.17" xml2js "^0.4.17"
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dependencies:
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webidl-conversions "^3.0.0"
which-module@^2.0.0: which-module@^2.0.0:
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