make sure resource detail breadcrumbs are clickable.
added functionality to extract resource references from raw resources.
This commit is contained in:
Jason Kulatunga
parent
1da64a9269
commit
4bc62135ea
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@ -2,7 +2,7 @@
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<div class="container">
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<div class="az-content-body">
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<div class="az-content-breadcrumb">
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<span routerLink="/source/{{sourceId}}">{{sourceName}}</span>
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<span class="cursor-pointer" routerLink="/source/{{sourceId}}">{{sourceName}}</span>
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<span>Resource</span>
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<span>{{resource?.source_resource_type}}</span>
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<span>{{resource?.source_resource_id}}</span>
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@ -11,6 +11,35 @@ export class FHIR401Client extends BaseClient implements IClient {
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//clients extending this class must validate fhirVersion matches using conformance/metadata url.
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fhirVersion = "4.0.1"
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// https://build.fhir.org/ig/HL7/US-Core/
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usCoreResources: string[] = [
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"AllergyIntolerance",
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//"Binary",
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"CarePlan",
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"CareTeam",
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"Condition",
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//"Coverage",
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"Device",
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"DiagnosticReport",
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"DocumentReference",
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"Encounter",
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"Goal",
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"Immunization",
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//"Location",
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//"Medication",
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//"MedicationRequest",
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"Observation",
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//"Organization",
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//"Patient",
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//"Practitioner",
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//"PractitionerRole",
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"Procedure",
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//"Provenance",
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//"RelatedPerson",
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// "ServiceRequest",
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// "Specimen",
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]
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constructor(source: Source, clientConfig: ClientConfig) {
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super(source, clientConfig);
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}
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@ -73,6 +102,348 @@ export class FHIR401Client extends BaseClient implements IClient {
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return upsertSummary
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}
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/**
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* Given a raw resource payload, this function will determine if there are references to other resources, and extract them if so
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* This is useful because search (by patient id) is disabled for certain resource types.
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* @param sourceResourceType
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* @param resourceRaw
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* @constructor
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*/
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public async ExtractResourceReference(sourceResourceType: string, resourceRaw): Promise<string[]> {
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let resourceRefs = []
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switch (sourceResourceType) {
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case "CarePlan":
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// encounter can contain
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//- Encounter
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resourceRefs.push(resourceRaw.encounter?.reference)
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//author can contain
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//- Practitioner
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//- Organization
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//- Patient
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//- PractitionerRole
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//- CareTeam
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//- RelatedPerson
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resourceRefs.push(resourceRaw.author?.reference)
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//contributor can contain
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//- Practitioner
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//- Organization
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//- Patient
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//- PractitionerRole
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//- CareTeam
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//- RelatedPerson
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resourceRefs.push(resourceRaw.contributor?.reference)
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//careTeam can contain
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//- CareTeam
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resourceRefs.push(resourceRaw.careTeam?.reference)
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break;
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case "CareTeam":
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// encounter can contain
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//- Encounter
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resourceRefs.push(resourceRaw.encounter?.reference)
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//participant[x].member can contain
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//- Practitioner
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//- Organization
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//- Patient
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//- PractitionerRole
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//- CareTeam
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//- RelatedPerson
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//participant[x].onBehalfOf can contain
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//- Organization
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resourceRaw.participant?.map((participant) => {
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resourceRefs.push(participant.member?.reference)
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resourceRefs.push(participant.onBehalfOf?.reference)
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})
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//managingOrganization
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//- Organization
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resourceRaw.managingOrganization?.map((managingOrganization) => {
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resourceRefs.push(managingOrganization.reference)
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})
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break;
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case "Condition":
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// recorder can contain
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//- Practitioner
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//- PractitionerRole
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//- Patient
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//- RelatedPerson
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resourceRefs.push(resourceRaw.recorder?.reference)
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// asserter can contain
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//- Practitioner
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//- PractitionerRole
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//- Patient
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//- RelatedPerson
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resourceRefs.push(resourceRaw.asserter?.reference)
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break;
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case "DiagnosticReport":
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//basedOn[x] can contain
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//- CarePlan
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//- ImmunizationRecommendation
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//- MedicationRequest
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//- NutritionOrder
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//- ServiceRequest
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resourceRaw.basedOn?.map((basedOn) => {
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resourceRefs.push(basedOn.reference)
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})
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// performer[x] can contain
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//- Practitioner
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//- PractitionerRole
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//- Organization
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//- CareTeam
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resourceRaw.performer?.map((performer) => {
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resourceRefs.push(performer.reference)
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})
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break;
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case "DocumentReference":
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//author[x] can contain
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//- Practitioner
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//- Organization
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//- Patient
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//- PractitionerRole
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//- CareTeam
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//- Device
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resourceRaw.author?.map((author) => {
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resourceRefs.push(author.reference)
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})
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//authenticator can contain
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//- Practitioner
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//- Organization
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//- PractitionerRole
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resourceRefs.push(resourceRaw.authenticator?.reference)
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// custodian can contain
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//- Organization
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resourceRefs.push(resourceRaw.custodian?.reference)
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// relatesTo.target
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//- DocumentReference
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resourceRaw.relatesTo?.map((relatesTo) => {
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resourceRefs.push(relatesTo.target?.reference)
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})
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//content.attachment can contain
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//- Attachment
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break
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case "Encounter":
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// basedOn[x] can contain
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//- ServiceRequest
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resourceRaw.basedOn?.map((basedOn) => {
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resourceRefs.push(basedOn.reference)
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})
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//participant[x].individual can contain
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//- Practitioner
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//- PractitionerRole
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//- RelatedPerson
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resourceRaw.participant?.map((participant) => {
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resourceRefs.push(participant.individual?.reference)
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})
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//reasonReference[x] can contain
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//- Condition
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//- Procedure
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//- Observation
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//- ImmunizationRecommendation
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resourceRaw.reasonReference?.map((reasonReference) => {
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resourceRefs.push(reasonReference.reference)
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})
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//hospitalization[x].origin can contain
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//- Location
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//- Organization
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//hospitalization[x].destination can contain
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//- Location
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//- Organization
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resourceRaw.hospitalization?.map((hospitalization) => {
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resourceRefs.push(hospitalization.origin?.reference)
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resourceRefs.push(hospitalization.destination?.reference)
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})
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//location[x].location can contain
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//- Location
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resourceRaw.location?.map((location) => {
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resourceRefs.push(location.location?.reference)
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})
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//serviceProvider can contain
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//- Organization
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resourceRefs.push(resourceRaw.serviceProvider?.reference)
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break
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case "Immunization":
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// location can contain
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//- Location
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resourceRefs.push(resourceRaw.location?.reference)
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// manufacturer can contain
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//- Organization
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resourceRefs.push(resourceRaw.manufacturer?.reference)
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//performer[x].actor can contain
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//- Practitioner | PractitionerRole | Organization
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resourceRaw.performer?.map((performer) => {
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resourceRefs.push(performer.actor?.reference)
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})
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//reasonReference[x] can contain
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//- Condition | Observation | DiagnosticReport
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resourceRaw.reasonReference?.map((reasonReference) => {
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resourceRefs.push(reasonReference.reference)
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})
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//protocolApplied[x].authority can contain
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//- Organization
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resourceRaw.protocolApplied?.map((protocolApplied) => {
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resourceRefs.push(protocolApplied.authority?.reference)
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})
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break
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case "Location":
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// managingOrganization can contain
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//- Organization
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resourceRefs.push(resourceRaw.managingOrganization?.reference)
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// partOf can contain
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//- Location
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resourceRefs.push(resourceRaw.partOf?.reference)
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break
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case "MedicationRequest":
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// reported.reportedReference can contain
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//- Practitioner
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//- Organization
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//- Patient
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//- PractitionerRole
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//- RelatedPerson
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resourceRefs.push(resourceRaw.reported?.reportedReference?.reference)
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// medication[x] can contain
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//- Medication
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resourceRefs.push(resourceRaw.reported?.reportedReference?.reference)
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// requester can contain
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//- Practitioner
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//- Organization
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//- Patient
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//- PractitionerRole
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//- RelatedPerson
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//- Device
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resourceRefs.push(resourceRaw.requester?.reference)
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// performer can contain
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//- Practitioner | PractitionerRole | Organization | Patient | Device | RelatedPerson | CareTeam
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resourceRefs.push(resourceRaw.performer?.reference)
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// recorder can contain
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//- Practitioner | PractitionerRole
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resourceRefs.push(resourceRaw.recorder?.reference)
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//TODO: reasonReference
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//TODO: basedOn
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//TODO: insurance
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// dispenseRequest.performer can contain
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//- Organization
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resourceRefs.push(resourceRaw.dispenseRequest?.performer?.reference)
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break
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case "Observation":
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//basedOn[x] can contain
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//- CarePlan | DeviceRequest | ImmunizationRecommendation | MedicationRequest | NutritionOrder | ServiceRequest
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resourceRaw.basedOn?.map((basedOn) => {
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resourceRefs.push(basedOn.reference)
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})
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// partOf[x] can contain
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//- MedicationAdministration | MedicationDispense | MedicationStatement | Procedure | Immunization | ImagingStudy
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resourceRaw.partOf?.map((partOf) => {
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resourceRefs.push(partOf.reference)
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})
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// performer[x] can contain
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//- Practitioner | PractitionerRole | Organization | CareTeam | Patient | RelatedPerson
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resourceRaw.performer?.map((performer) => {
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resourceRefs.push(performer.reference)
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})
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// device can contain
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//- Device | DeviceMetric
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resourceRefs.push(resourceRaw.device?.reference)
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break
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case "PractitionerRole":
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// practitioner can contain
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//- Practitioner
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resourceRefs.push(resourceRaw.practitioner?.reference)
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//organization can contain
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//- Organization
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resourceRefs.push(resourceRaw.organization?.reference)
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//location can contain
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//- Location
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resourceRefs.push(resourceRaw.location?.reference)
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//TODO: healthcareService
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//TODO: endpoint
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break
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case "ServiceRequest":
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// basedOn[x] can contain
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//- CarePlan | ServiceRequest | MedicationRequest
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resourceRaw.basedOn?.map((basedOn) => {
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resourceRefs.push(basedOn.reference)
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})
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//requester can contain
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//- Practitioner
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//- Organization
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//- Patient
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//- PractitionerRole
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//- RelatedPerson
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//- Device
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resourceRefs.push(resourceRaw.requester?.reference)
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//performer[x] can contain
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//- Practitioner | PractitionerRole | Organization | CareTeam | HealthcareService | Patient | Device | RelatedPerson
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resourceRaw.performer?.map((performer) => {
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resourceRefs.push(performer.reference)
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})
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//locationReference[x] an contain
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//-Location
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resourceRaw.locationReference?.map((locationReference) => {
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resourceRefs.push(locationReference.reference)
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})
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//reasonReference[x] can contain
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//-Condition
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//-Observation
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//-DiagnosticReport
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//-DocumentReference
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resourceRaw.reasonReference?.map((reasonReference) => {
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resourceRefs.push(reasonReference.reference)
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})
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//insurance[x] can contain
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//- Coverage | ClaimResponse
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resourceRaw.insurance?.map((insurance) => {
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resourceRefs.push(insurance.reference)
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})
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break
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}
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// remove all null values, remove all duplicates
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let cleanResourceRefs = resourceRefs.filter(i => !(typeof i === 'undefined' || i === null));
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cleanResourceRefs = [...new Set(cleanResourceRefs)]
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return cleanResourceRefs
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}
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/**
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* This function is used to sync all resources from a Bundle file. Not applicable to this Client
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* @param db
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