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added database migration framework.

This commit is contained in:
Jason Kulatunga 2023-10-17 11:46:08 -07:00
parent 7018c3b85a
commit 6858ae8d4c
No known key found for this signature in database
6 changed files with 54 additions and 32 deletions
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14
backend/pkg/database/gorm_common.go
View File

@ -32,20 +32,6 @@ type GormRepository struct {
EventBus event_bus.Interface
}
func (gr *GormRepository) Migrate() error {
err := gr.GormClient.AutoMigrate(
&models.User{},
&models.SourceCredential{},
&models.BackgroundJob{},
&models.Glossary{},
&models.UserSettingEntry{},
)
if err != nil {
return fmt.Errorf("Failed to automigrate! - %v", err)
}
return nil
}
func (gr *GormRepository) Close() error {
return nil
}

48
backend/pkg/database/gorm_repository_migrations.go Normal file
View File

@ -0,0 +1,48 @@
package database
import (
"github.com/fastenhealth/fasten-onprem/backend/pkg/models"
databaseModel "github.com/fastenhealth/fasten-onprem/backend/pkg/models/database"
"github.com/go-gormigrate/gormigrate/v2"
"gorm.io/gorm"
)
func (gr *GormRepository) Migrate() error {
gr.Logger.Infoln("Database migration starting. Please wait, this process may take a long time....")
gormMigrateOptions := gormigrate.DefaultOptions
gormMigrateOptions.UseTransaction = true
//use echo $(date '+%Y%m%d%H%M%S') to generate new ID's
m := gormigrate.New(gr.GormClient, gormMigrateOptions, []*gormigrate.Migration{
{
ID: "20231017112246", // base database models //TODO: figure out how to version these correctly (SourceCredential is complicated)
Migrate: func(tx *gorm.DB) error {
return tx.AutoMigrate(
&models.BackgroundJob{},
&models.Glossary{},
&models.SourceCredential{},
&models.UserSettingEntry{},
&models.User{},
)
},
},
{
ID: "20231017113858", // FHIR Resource Database models.
Migrate: func(tx *gorm.DB) error {
//automigrate Fhir Resource Tables
return databaseModel.Migrate(tx)
},
},
})
if err := m.Migrate(); err != nil {
gr.Logger.Errorf("Database migration failed with error. \n Please open a github issue at https://github.com/fastenhealth/fasten-onprem and attach a copy of your fasten.db file. \n %v", err)
return err
}
gr.Logger.Infoln("Database migration completed successfully")
return nil
}

7
backend/pkg/database/postgres_repository.go
View File

@ -7,7 +7,6 @@ import (
"github.com/fastenhealth/fasten-onprem/backend/pkg/config"
"github.com/fastenhealth/fasten-onprem/backend/pkg/event_bus"
"github.com/fastenhealth/fasten-onprem/backend/pkg/models"
databaseModel "github.com/fastenhealth/fasten-onprem/backend/pkg/models/database"
"github.com/sirupsen/logrus"
"gorm.io/driver/postgres"
"gorm.io/gorm"
@ -50,12 +49,6 @@ func newPostgresRepository(appConfig config.Interface, globalLogger logrus.Field
return nil, err
}
//automigrate Fhir Resource Tables
err = databaseModel.Migrate(fastenRepo.GormClient)
if err != nil {
return nil, err
}
// create/update admin user
//TODO: determine if this admin user is ncessary
//SECURITY: validate this user is necessary

8
backend/pkg/database/sqlite_repository.go
View File

@ -7,7 +7,6 @@ import (
"github.com/fastenhealth/fasten-onprem/backend/pkg/config"
"github.com/fastenhealth/fasten-onprem/backend/pkg/event_bus"
"github.com/fastenhealth/fasten-onprem/backend/pkg/models"
databaseModel "github.com/fastenhealth/fasten-onprem/backend/pkg/models/database"
"github.com/glebarez/sqlite"
"github.com/sirupsen/logrus"
"gorm.io/gorm"
@ -75,18 +74,11 @@ func newSqliteRepository(appConfig config.Interface, globalLogger logrus.FieldLo
EventBus: eventBus,
}
//TODO: automigrate for now, this should be replaced with a migration tool once the DB has stabilized.
err = fastenRepo.Migrate()
if err != nil {
return nil, err
}
//automigrate Fhir Resource Tables
err = databaseModel.Migrate(fastenRepo.GormClient)
if err != nil {
return nil, err
}
// create/update admin user
//TODO: determine if this admin user is ncessary
//SECURITY: validate this user is necessary

3
go.mod
View File

@ -11,6 +11,7 @@ require (
github.com/fastenhealth/gofhir-models v0.0.6
github.com/gin-gonic/gin v1.9.0
github.com/glebarez/sqlite v1.5.0
github.com/go-gormigrate/gormigrate/v2 v2.1.1
github.com/golang-jwt/jwt/v4 v4.4.2
github.com/golang/mock v1.6.0
github.com/google/go-github/v54 v54.0.0
@ -27,7 +28,7 @@ require (
golang.org/x/exp v0.0.0-20220303212507-bbda1eaf7a17
golang.org/x/net v0.14.0
gorm.io/datatypes v1.0.7
gorm.io/gorm v1.25.2-0.20230530020048-26663ab9bf55
gorm.io/gorm v1.25.4
)
require (

6
go.sum
View File

@ -224,6 +224,8 @@ github.com/globalsign/mgo v0.0.0-20181015135952-eeefdecb41b8/go.mod h1:xkRDCp4j0
github.com/go-gl/glfw v0.0.0-20190409004039-e6da0acd62b1/go.mod h1:vR7hzQXu2zJy9AVAgeJqvqgH9Q5CA+iKCZ2gyEVpxRU=
github.com/go-gl/glfw/v3.3/glfw v0.0.0-20191125211704-12ad95a8df72/go.mod h1:tQ2UAYgL5IevRw8kRxooKSPJfGvJ9fJQFa0TUsXzTg8=
github.com/go-gl/glfw/v3.3/glfw v0.0.0-20200222043503-6f7a984d4dc4/go.mod h1:tQ2UAYgL5IevRw8kRxooKSPJfGvJ9fJQFa0TUsXzTg8=
github.com/go-gormigrate/gormigrate/v2 v2.1.1 h1:eGS0WTFRV30r103lU8JNXY27KbviRnqqIDobW3EV3iY=
github.com/go-gormigrate/gormigrate/v2 v2.1.1/go.mod h1:L7nJ620PFDKei9QOhJzqA8kRCk+E3UbV2f5gv+1ndLc=
github.com/go-kit/kit v0.8.0/go.mod h1:xBxKIO96dXMWWy0MnWVtmwkA9/13aqxPnvrjFYMA2as=
github.com/go-kit/kit v0.9.0/go.mod h1:xBxKIO96dXMWWy0MnWVtmwkA9/13aqxPnvrjFYMA2as=
github.com/go-kit/log v0.1.0/go.mod h1:zbhenjAZHb184qTLMA9ZjW7ThYL0H2mk7Q6pNt4vbaY=
@ -1289,8 +1291,8 @@ gorm.io/driver/sqlserver v1.3.1/go.mod h1:w25Vrx2BG+CJNUu/xKbFhaKlGxT/nzRkhWCCop
gorm.io/gorm v1.23.1/go.mod h1:l2lP/RyAtc1ynaTjFksBde/O8v9oOGIApu2/xRitmZk=
gorm.io/gorm v1.23.6/go.mod h1:l2lP/RyAtc1ynaTjFksBde/O8v9oOGIApu2/xRitmZk=
gorm.io/gorm v1.24.0/go.mod h1:DVrVomtaYTbqs7gB/x2uVvqnXzv0nqjB396B8cG4dBA=
gorm.io/gorm v1.25.2-0.20230530020048-26663ab9bf55 h1:sC1Xj4TYrLqg1n3AN10w871An7wJM0gzgcm8jkIkECQ=
gorm.io/gorm v1.25.2-0.20230530020048-26663ab9bf55/go.mod h1:L4uxeKpfBml98NYqVqwAdmV1a2nBtAec/cf3fpucW/k=
gorm.io/gorm v1.25.4 h1:iyNd8fNAe8W9dvtlgeRI5zSVZPsq3OpcTu37cYcpCmw=
gorm.io/gorm v1.25.4/go.mod h1:L4uxeKpfBml98NYqVqwAdmV1a2nBtAec/cf3fpucW/k=
gotest.tools v2.2.0+incompatible/go.mod h1:DsYFclhRJ6vuDpmuTbkuFWG+y2sxOXAzmJt81HFBacw=
honnef.co/go/tools v0.0.0-20190102054323-c2f93a96b099/go.mod h1:rf3lG4BRIbNafJWhAfAdb/ePZxsR/4RtNHQocxwk9r4=
honnef.co/go/tools v0.0.0-20190106161140-3f1c8253044a/go.mod h1:rf3lG4BRIbNafJWhAfAdb/ePZxsR/4RtNHQocxwk9r4=