Parse reference ranges that use `<` and `>` (#450)
* Add vscode config * Comment out empty tests causing issues running tests in vscode * Add Fishery, update test dependencies, update chart.js * Add factory for building fhir r4 observation object * Fix deprecation warnings in _mixins.scss * Update observation model for better value and reference range parsing * Add observation-bar-chart.component to pull out bar chart logic into reusable component * Use new component in observation resource and report lab component
This commit is contained in:
Jean Fernandez
GitHub
parent
43579df659
commit
bcffbb4769
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@ -36,6 +36,13 @@ cmake-build-release/
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# IntelliJ
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out/
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# VS Code files for those working on multiple tools
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.vscode/*
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!.vscode/settings.json
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!.vscode/tasks.json
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!.vscode/launch.json
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!.vscode/extensions.json
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# mpeltonen/sbt-idea plugin
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.idea_modules/
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@ -70,3 +77,4 @@ fasten.db-shm
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fasten.db-wal
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backend/resources/related_versions.json
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frontend/documentation.json
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@ -0,0 +1,26 @@
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{
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"version": "0.2.0",
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"configurations": [
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{
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"name": "Go Tests",
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"type": "go",
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"request": "launch",
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"mode": "test",
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"program": "${workspaceFolder}/backend",
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"args": [
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"-test.run"
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]
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},
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{
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"type": "chrome",
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"request": "attach",
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"name": "Attach Karma Chrome",
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"address": "localhost",
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"port": 9333,
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"pathMapping": {
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"/": "${workspaceRoot}/frontend",
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"/base/": "${workspaceRoot}/frontend"
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}
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}
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]
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}
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@ -0,0 +1,6 @@
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{
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"karmaTestExplorer.karmaConfFilePath": "frontend/karma.conf.js",
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"karmaTestExplorer.projectWorkspaces": [
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"frontend"
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]
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}
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@ -52,8 +52,8 @@ module.exports = function(config) {
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customLaunchers: {
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ChromeHeadlessCI: {
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base: 'ChromeHeadless',
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flags: ['--no-sandbox', '--disable-gpu']
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}
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flags: ['--no-sandbox', '--disable-gpu', '--remote-debugging-port=9333']
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},
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},
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});
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};
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@ -39,7 +39,7 @@
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"@webcomponents/webcomponentsjs": "^2.8.0",
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"asmcrypto.js": "^2.3.2",
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"bootstrap": "^4.4.1",
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"chart.js": "^4.0.1",
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"chart.js": "^4.4.2",
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"dwv": "^0.31.0",
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"fhirpath": "^3.3.0",
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"gridstack": "8.1.1",
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@ -77,14 +77,15 @@
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"@types/jasminewd2": "~2.0.3",
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"chromatic": "^6.19.8",
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"codelyzer": "^5.1.2",
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"jasmine-core": "~3.5.0",
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"jasmine-spec-reporter": "~5.0.0",
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"karma": "~6.4.0",
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"karma-chrome-launcher": "~3.1.0",
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"karma-coverage": "^2.2.0",
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"fishery": "^2.2.2",
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"jasmine-core": "~5.1.2",
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"jasmine-spec-reporter": "~7.0.0",
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"karma": "~6.4.3",
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"karma-chrome-launcher": "~3.2.0",
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"karma-coverage": "^2.2.1",
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"karma-coverage-istanbul-reporter": "~3.0.2",
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"karma-jasmine": "~4.0.0",
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"karma-jasmine-html-reporter": "^1.5.0",
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"karma-jasmine": "~5.1.0",
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"karma-jasmine-html-reporter": "^2.1.0",
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"protractor": "~7.0.0",
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"react": "^18.2.0",
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"react-dom": "^18.2.0",
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@ -0,0 +1,9 @@
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<!-- surrounding div needed so chart can resize when window size changes -->
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<div class="observation-bar-chart-container">
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<canvas baseChart
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[height]="chartHeight"
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[type]="'bar'"
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[datasets]="barChartData"
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[labels]="barChartLabels"
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[options]="barChartOptions"></canvas>
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</div>
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@ -0,0 +1,22 @@
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import { ComponentFixture, TestBed } from '@angular/core/testing';
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import { ObservationBarChartComponent } from './observation-bar-chart.component';
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describe('ObservationBarChartComponent', () => {
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let component: ObservationBarChartComponent;
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let fixture: ComponentFixture<ObservationBarChartComponent>;
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beforeEach(async () => {
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await TestBed.configureTestingModule({
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imports: [ ObservationBarChartComponent ]
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})
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.compileComponents();
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fixture = TestBed.createComponent(ObservationBarChartComponent);
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component = fixture.componentInstance;
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fixture.detectChanges();
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});
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it('should create', () => {
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expect(component).toBeTruthy();
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});
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});
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@ -0,0 +1,161 @@
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import { Component, Input, OnInit } from '@angular/core';
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import { formatDate } from '@angular/common';
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import { ObservationModel } from '../../../../../lib/models/resources/observation-model';
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import { ChartConfiguration } from 'chart.js';
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import { NgChartsModule } from 'ng2-charts';
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const defaultChartHeight = 65;
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const defaultChartEntryHeight = 30;
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@Component({
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standalone: true,
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selector: 'observation-bar-chart',
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imports: [ NgChartsModule ],
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templateUrl: './observation-bar-chart.component.html',
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styleUrls: ['./observation-bar-chart.component.scss']
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})
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export class ObservationBarChartComponent implements OnInit {
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@Input() observations: [ObservationModel]
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chartHeight = defaultChartEntryHeight;
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// based on https://stackoverflow.com/questions/38889716/chartjs-2-stacked-bar-with-marker-on-top
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// https://stackoverflow.com/questions/62711919/chart-js-horizontal-lines-per-bar
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barChartData =[
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{
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label: "Reference",
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data: [],
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dataLabels: [],
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backgroundColor: "rgba(91, 71, 251,0.6)",
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hoverBackgroundColor: "rgba(91, 71, 251,0.2)",
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parsing: {
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xAxisKey: 'range'
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},
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tooltip: {
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callbacks: {
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label: function(context) {
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return `${context.dataset.label}: ${context.dataset.dataLabels[context.dataIndex]}`;
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}
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}
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}
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},
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{
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label: "Result",
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data: [],
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// @ts-ignore
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dataLabels: [],
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borderColor: "rgba(0,0,0,1)",
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backgroundColor: "rgba(0,0,0,1)",
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hoverBackgroundColor: "rgba(0,0,0,1)",
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minBarLength: 3,
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barPercentage: 1,
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parsing: {
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xAxisKey: 'value'
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},
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// @ts-ignore
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tooltip: {
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callbacks: {
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label: function(context) {
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let label = `${context.dataset.label}: ${context.parsed.x}`;
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if (context.dataset.dataLabels[context.dataIndex]) {
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return `${label} ${context.dataset.dataLabels[context.dataIndex]}`;
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}
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return label;
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}
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}
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}
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}
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] as ChartConfiguration<'bar'>['data']['datasets']
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barChartLabels = [] // ["2020", "2018"] //["1","2","3","4","5","6","7","8"]
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barChartOptions = {
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indexAxis: 'y',
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maintainAspectRatio: false,
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legend:{
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display: false,
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},
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autoPadding: true,
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//add padding to fix tooltip cutoff
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layout: {
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padding: {
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left: 0,
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right: 4,
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top: 0,
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bottom: 10
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}
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},
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scales: {
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y: {
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stacked: true,
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ticks: {
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beginAtZero: true,
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fontSize: 10,
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min: 0,
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},
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},
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x: {
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scaleLabel:{
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display: false,
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padding: 4,
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},
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ticks: {
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beginAtZero: true,
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fontSize: 10,
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min: 0,
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},
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},
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}
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} as ChartConfiguration<'bar'>['options']
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barChartColors = [
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{
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backgroundColor: 'white'
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}
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];
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constructor() { }
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ngOnInit(): void {
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if(!this.observations || !this.observations[0]) {
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return;
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}
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let currentValues: number[] = []
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let referenceRanges = []
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for(let observation of this.observations) {
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let refRange = observation.reference_range;
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referenceRanges.push([refRange.low || 0, refRange.high || 0]);
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currentValues.push(observation.value_quantity_value);
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if (observation.effective_date) {
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this.barChartLabels.push(formatDate(observation.effective_date, "mediumDate", "en-US", undefined));
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} else {
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this.barChartLabels.push('Unknown date');
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}
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this.barChartData[0]['dataLabels'].push(observation.referenceRangeDisplay());
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this.barChartData[1]['dataLabels'].push(observation.value_quantity_unit);
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}
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let xAxisMax = Math.max(...currentValues) * 1.3;
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this.barChartOptions.scales['x']['max'] = xAxisMax
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let updatedRefRanges = referenceRanges.map(range => {
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if (range[0] && !range[1]) {
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return [range[0], xAxisMax]
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} else {
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return [range[0], range[1]]
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}
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});
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// @ts-ignore
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this.barChartData[0].data = updatedRefRanges
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this.barChartData[1].data = currentValues.map(v => [v, v])
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this.chartHeight = defaultChartHeight + (defaultChartEntryHeight * currentValues.length)
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}
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}
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@ -0,0 +1,64 @@
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import type { Meta, StoryObj } from '@storybook/angular';
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import { fhirVersions } from "../../../../../lib/models/constants";
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import { ObservationBarChartComponent } from './observation-bar-chart.component';
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import { ObservationModel } from 'src/lib/models/resources/observation-model';
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import { observationR4Factory } from 'src/lib/fixtures/factories/r4/resources/observation-r4-factory';
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// More on how to set up stories at: https://storybook.js.org/docs/angular/writing-stories/introduction
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const meta: Meta<ObservationBarChartComponent> = {
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title: 'Fhir Card/Common/ObservationBarChart',
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component: ObservationBarChartComponent,
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decorators: [
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],
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tags: ['autodocs'],
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render: (args: ObservationBarChartComponent) => ({
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props: {
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backgroundColor: null,
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...args,
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},
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}),
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argTypes: {
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observations: {
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control: 'object',
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}
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},
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};
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export default meta;
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type Story = StoryObj<ObservationBarChartComponent>;
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export const NoRange: Story = {
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args: {
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observations: [new ObservationModel(observationR4Factory.build(), fhirVersions.R4)]
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}
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};
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export const Range: Story = {
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args: {
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observations: [new ObservationModel(observationR4Factory.referenceRange().build(), fhirVersions.R4)]
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}
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};
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export const RangeOnlyLow: Story = {
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args: {
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observations: [new ObservationModel(observationR4Factory.referenceRangeOnlyLow().build(), fhirVersions.R4)]
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}
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};
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export const RangeOnlyLowText: Story = {
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args: {
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observations: [new ObservationModel(observationR4Factory.referenceRangeStringOnlyLow().build(), fhirVersions.R4)]
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}
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};
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export const RangeOnlyHigh: Story = {
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args: {
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observations: [new ObservationModel(observationR4Factory.referenceRangeOnlyHigh().build(), fhirVersions.R4)]
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}
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};
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export const RangeOnlyHighText: Story = {
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args: {
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observations: [new ObservationModel(observationR4Factory.referenceRangeStringOnlyHigh().build(), fhirVersions.R4)]
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}
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};
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@ -28,6 +28,7 @@ import {FhirCardComponent} from './fhir-card/fhir-card.component';
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import {FhirCardOutletDirective} from './fhir-card/fhir-card-outlet.directive';
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import { EncounterComponent } from './resources/encounter/encounter.component';
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import { RtfComponent } from './datatypes/rtf/rtf.component';
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import { ObservationBarChartComponent } from './common/observation-bar-chart/observation-bar-chart.component';
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@ -36,6 +37,7 @@ import { RtfComponent } from './datatypes/rtf/rtf.component';
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//common
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CommonModule,
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BadgeComponent,
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ObservationBarChartComponent,
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//datatypes
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TableComponent,
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BinaryTextComponent,
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@ -75,6 +77,7 @@ import { RtfComponent } from './datatypes/rtf/rtf.component';
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//common
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BadgeComponent,
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TableComponent,
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ObservationBarChartComponent,
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//datatypes
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BinaryTextComponent,
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CodableConceptComponent,
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|
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@ -14,13 +14,7 @@
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<p class="az-content-text mg-b-20">Observations are a central element in healthcare, used to support diagnosis, monitor progress, determine baselines and patterns and even capture demographic characteristics.</p>
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<fhir-ui-table [displayModel]="displayModel" [tableData]="tableData"></fhir-ui-table>
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<canvas baseChart
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[height]="chartHeight"
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[type]="'bar'"
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[datasets]="barChartData"
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[labels]="barChartLabels"
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[options]="barChartOptions"
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></canvas>
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<observation-bar-chart [observations]="[displayModel]"></observation-bar-chart>
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</div>
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<div *ngIf="showDetails" class="card-footer">
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<a class="float-right" [routerLink]="['/explore', displayModel?.source_id, 'resource', displayModel?.source_resource_id]">details</a>
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||||
|
|
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@ -1,19 +1,17 @@
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import {ChangeDetectorRef, Component, Input, OnInit} from '@angular/core';
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||||
import {NgbCollapseModule} from '@ng-bootstrap/ng-bootstrap';
|
||||
import {CommonModule, formatDate} from '@angular/common';
|
||||
import { NgbCollapseModule } from '@ng-bootstrap/ng-bootstrap';
|
||||
import {CommonModule} from '@angular/common';
|
||||
import {BadgeComponent} from '../../common/badge/badge.component';
|
||||
import {TableComponent} from '../../common/table/table.component';
|
||||
import {Router, RouterModule} from '@angular/router';
|
||||
import {LocationModel} from '../../../../../lib/models/resources/location-model';
|
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import {TableRowItem, TableRowItemDataType} from '../../common/table/table-row-item';
|
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import {ObservationModel} from '../../../../../lib/models/resources/observation-model';
|
||||
import {ChartConfiguration} from 'chart.js';
|
||||
import fhirpath from 'fhirpath';
|
||||
import {NgChartsModule} from 'ng2-charts';
|
||||
import { ObservationBarChartComponent } from 'src/app/components/fhir-card/common/observation-bar-chart/observation-bar-chart.component';
|
||||
|
||||
@Component({
|
||||
standalone: true,
|
||||
imports: [NgbCollapseModule, CommonModule, BadgeComponent, TableComponent, RouterModule, NgChartsModule],
|
||||
imports: [CommonModule, BadgeComponent, TableComponent, RouterModule, NgbCollapseModule, ObservationBarChartComponent],
|
||||
providers: [],
|
||||
selector: 'fhir-observation',
|
||||
templateUrl: './observation.component.html',
|
||||
styleUrls: ['./observation.component.scss']
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||||
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@ -25,81 +23,6 @@ export class ObservationComponent implements OnInit {
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|||
|
||||
tableData: TableRowItem[] = []
|
||||
|
||||
//observation chart data
|
||||
chartHeight = 45
|
||||
|
||||
barChartData =[
|
||||
|
||||
{
|
||||
label: "Reference",
|
||||
data: [[55,102], [44,120]],
|
||||
backgroundColor: "rgba(91, 71, 251,0.6)",
|
||||
hoverBackgroundColor: "rgba(91, 71, 251,0.2)"
|
||||
},{
|
||||
label: "Current",
|
||||
data: [[80,81], [130,131]],
|
||||
borderColor: "rgba(0,0,0,1)",
|
||||
backgroundColor: "rgba(0,0,0,1)",
|
||||
hoverBackgroundColor: "rgba(0,0,0,1)",
|
||||
minBarLength: 3,
|
||||
barPercentage: 1,
|
||||
tooltip: {
|
||||
|
||||
}
|
||||
}
|
||||
] as ChartConfiguration<'bar'>['data']['datasets']
|
||||
|
||||
barChartLabels = [] // ["2020", "2018"] //["1","2","3","4","5","6","7","8"]
|
||||
|
||||
barChartOptions = {
|
||||
indexAxis: 'y',
|
||||
legend:{
|
||||
display: false,
|
||||
},
|
||||
autoPadding: true,
|
||||
//add padding to fix tooltip cutoff
|
||||
layout: {
|
||||
padding: {
|
||||
left: 0,
|
||||
right: 4,
|
||||
top: 0,
|
||||
bottom: 10
|
||||
}
|
||||
},
|
||||
scales: {
|
||||
y: {
|
||||
stacked: true,
|
||||
ticks: {
|
||||
beginAtZero: true,
|
||||
fontSize: 10,
|
||||
min: 0,
|
||||
// max: 80
|
||||
},
|
||||
},
|
||||
x: {
|
||||
scaleLabel:{
|
||||
display: false,
|
||||
labelString: "xaxis",
|
||||
padding: 4,
|
||||
},
|
||||
// stacked: true,
|
||||
ticks: {
|
||||
beginAtZero: true,
|
||||
fontSize: 10,
|
||||
min: 0,
|
||||
// max: 80
|
||||
},
|
||||
},
|
||||
}
|
||||
} as ChartConfiguration<'bar'>['options']
|
||||
|
||||
barChartColors = [
|
||||
{
|
||||
backgroundColor: 'white'
|
||||
}
|
||||
];
|
||||
|
||||
|
||||
constructor(public changeRef: ChangeDetectorRef, public router: Router) { }
|
||||
|
||||
ngOnInit(): void {
|
||||
|
|
@ -107,7 +30,8 @@ export class ObservationComponent implements OnInit {
|
|||
return
|
||||
}
|
||||
|
||||
this.tableData.push( {
|
||||
this.tableData.push(
|
||||
{
|
||||
label: 'Issued on',
|
||||
data: this.displayModel?.effective_date,
|
||||
enabled: !!this.displayModel?.effective_date,
|
||||
|
|
@ -131,30 +55,13 @@ export class ObservationComponent implements OnInit {
|
|||
},
|
||||
{
|
||||
label: 'Reference',
|
||||
data: [this.displayModel?.reference_range?.[0]?.low?.value,this.displayModel?.reference_range?.[0]?.high?.value].join(" "),
|
||||
data: this.displayModel.referenceRangeDisplay(),
|
||||
enabled: !!this.displayModel?.reference_range,
|
||||
})
|
||||
|
||||
|
||||
//populate chart data
|
||||
if(this.displayModel?.effective_date) {
|
||||
this.barChartLabels.push(
|
||||
formatDate(this.displayModel?.effective_date, "mediumDate", "en-US", undefined)
|
||||
)
|
||||
} else {
|
||||
this.barChartLabels.push("")
|
||||
}
|
||||
|
||||
this.barChartData[0].data = [[this.displayModel?.reference_range?.[0]?.low?.value, this.displayModel?.reference_range?.[0]?.high?.value]]
|
||||
this.barChartData[1].data = [[this.displayModel?.value_quantity_value as number, this.displayModel?.value_quantity_value as number]]
|
||||
|
||||
let suggestedMax = (this.displayModel?.value_quantity_value as number) * 1.1;
|
||||
this.barChartOptions.scales['x']['suggestedMax'] = suggestedMax
|
||||
|
||||
console.log("Observation chart data: ", this.barChartData[0].data, this.barChartData[1].data)
|
||||
}
|
||||
)
|
||||
}
|
||||
|
||||
markForCheck(){
|
||||
this.changeRef.markForCheck()
|
||||
}
|
||||
|
||||
}
|
||||
|
|
|
|||
|
|
@ -1,24 +1,18 @@
|
|||
import type { Meta, StoryObj } from '@storybook/angular';
|
||||
import {fhirVersions} from "../../../../../lib/models/constants";
|
||||
import R4Example1Json from "../../../../../lib/fixtures/r4/resources/observation/example1.json";
|
||||
import R4Example2Json from "../../../../../lib/fixtures/r4/resources/observation/example2.json";
|
||||
import R4Example3Json from "../../../../../lib/fixtures/r4/resources/observation/example3.json";
|
||||
import {ObservationComponent} from "./observation.component";
|
||||
import {ObservationModel} from "../../../../../lib/models/resources/observation-model";
|
||||
import { moduleMetadata } from '@storybook/angular';
|
||||
import { fhirVersions } from "../../../../../lib/models/constants";
|
||||
import { ObservationComponent } from "./observation.component";
|
||||
import { ObservationModel } from "../../../../../lib/models/resources/observation-model";
|
||||
import { RouterTestingModule } from '@angular/router/testing';
|
||||
import { observationR4Factory } from 'src/lib/fixtures/factories/r4/resources/observation-r4-factory';
|
||||
|
||||
|
||||
|
||||
// More on how to set up stories at: https://storybook.js.org/docs/angular/writing-stories/introduction
|
||||
const meta: Meta<ObservationComponent> = {
|
||||
title: 'Fhir Card/Observation',
|
||||
component: ObservationComponent,
|
||||
decorators: [
|
||||
// moduleMetadata({
|
||||
// imports: [AppModule]
|
||||
// })
|
||||
// applicationConfig({
|
||||
// providers: [importProvidersFrom(AppModule)],
|
||||
// }),
|
||||
moduleMetadata({
|
||||
imports: [ RouterTestingModule ]
|
||||
})
|
||||
],
|
||||
tags: ['autodocs'],
|
||||
render: (args: ObservationComponent) => ({
|
||||
|
|
@ -40,30 +34,11 @@ const meta: Meta<ObservationComponent> = {
|
|||
export default meta;
|
||||
type Story = StoryObj<ObservationComponent>;
|
||||
|
||||
// More on writing stories with args: https://storybook.js.org/docs/angular/writing-stories/args
|
||||
let r4Example1DisplayModel = new ObservationModel(R4Example1Json, fhirVersions.R4)
|
||||
r4Example1DisplayModel.source_id = '123-456-789'
|
||||
r4Example1DisplayModel.source_resource_id = '123-456-789'
|
||||
export const R4Example1: Story = {
|
||||
let observation = new ObservationModel(observationR4Factory.referenceRange().build(), fhirVersions.R4);
|
||||
observation.source_id = '123-456-789'
|
||||
observation.source_resource_id = '123-456-789'
|
||||
export const Entry: Story = {
|
||||
args: {
|
||||
displayModel: r4Example1DisplayModel
|
||||
}
|
||||
};
|
||||
|
||||
let r4Example2DisplayModel = new ObservationModel(R4Example2Json, fhirVersions.R4)
|
||||
r4Example2DisplayModel.source_id = '123-456-789'
|
||||
r4Example2DisplayModel.source_resource_id = '123-456-789'
|
||||
export const R4Example2: Story = {
|
||||
args: {
|
||||
displayModel: r4Example2DisplayModel
|
||||
}
|
||||
};
|
||||
|
||||
let r4Example3DisplayModel = new ObservationModel(R4Example3Json, fhirVersions.R4)
|
||||
r4Example3DisplayModel.source_id = '123-456-789'
|
||||
r4Example3DisplayModel.source_resource_id = '123-456-789'
|
||||
export const R4Example3: Story = {
|
||||
args: {
|
||||
displayModel: r4Example3DisplayModel
|
||||
displayModel: observation
|
||||
}
|
||||
};
|
||||
|
|
|
|||
|
|
@ -36,12 +36,13 @@
|
|||
<div #collapse="ngbCollapse" [ngbCollapse]="true">
|
||||
|
||||
<ul>
|
||||
<li class="cursor-pointer tx-indigo" *ngFor="let observation of observations" [routerLink]="['/explore', observation?.source_id, 'resource', observation?.source_resource_id]">Observation: {{observation | fhirPath: "Observation.effectiveDateTime": "Observation.issued" | date}}</li>
|
||||
<li class="cursor-pointer tx-indigo" *ngFor="let observation of observations">
|
||||
<a [routerLink]="['/explore', observation?.source_id, 'resource', observation?.source_resource_id]">
|
||||
Observation: {{observation | fhirPath: "Observation.effectiveDateTime": "Observation.issued" | date}}
|
||||
</a>
|
||||
</li>
|
||||
</ul>
|
||||
</div>
|
||||
|
||||
|
||||
|
||||
</div>
|
||||
</div>
|
||||
|
||||
|
|
@ -53,15 +54,12 @@
|
|||
</div>
|
||||
|
||||
<div class="col-12">
|
||||
<canvas baseChart [height]="chartHeight" [type]="'bar'" [datasets]="barChartData" [labels]="barChartLabels" [options]="barChartOptions"></canvas>
|
||||
<observation-bar-chart [observations]="observationModels"></observation-bar-chart>
|
||||
</div>
|
||||
|
||||
|
||||
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
|
||||
</div><!-- card-body -->
|
||||
</div>
|
||||
|
|
|
|||
|
|
@ -1,8 +1,7 @@
|
|||
import { ComponentFixture, TestBed } from '@angular/core/testing';
|
||||
|
||||
import { ReportLabsObservationComponent } from './report-labs-observation.component';
|
||||
import {PipesModule} from '../../pipes/pipes.module';
|
||||
import {NgbCollapseModule} from '@ng-bootstrap/ng-bootstrap';
|
||||
import { PipesModule } from '../../pipes/pipes.module';
|
||||
import { NgbCollapse } from '@ng-bootstrap/ng-bootstrap';
|
||||
|
||||
describe('ReportLabsObservationComponent', () => {
|
||||
let component: ReportLabsObservationComponent;
|
||||
|
|
@ -10,8 +9,8 @@ describe('ReportLabsObservationComponent', () => {
|
|||
|
||||
beforeEach(async () => {
|
||||
await TestBed.configureTestingModule({
|
||||
imports: [PipesModule, NgbCollapseModule],
|
||||
declarations: [ ReportLabsObservationComponent ]
|
||||
imports: [PipesModule],
|
||||
declarations: [ ReportLabsObservationComponent, NgbCollapse ],
|
||||
})
|
||||
.compileComponents();
|
||||
|
||||
|
|
|
|||
|
|
@ -1,11 +1,6 @@
|
|||
import {Component, Input, OnInit} from '@angular/core';
|
||||
import {ResourceFhir} from '../../models/fasten/resource_fhir';
|
||||
import {ChartConfiguration} from 'chart.js';
|
||||
// import { ChartConfiguration, ChartData, ChartEvent, ChartType } from 'chart.js';
|
||||
// import { BaseChartDirective } from 'ng2-charts';
|
||||
import * as fhirpath from 'fhirpath';
|
||||
import {formatDate} from '@angular/common';
|
||||
|
||||
import { Component, Input, OnInit } from '@angular/core';
|
||||
import { ResourceFhir } from '../../models/fasten/resource_fhir';
|
||||
import { ObservationModel } from 'src/lib/models/resources/observation-model';
|
||||
|
||||
@Component({
|
||||
selector: 'app-report-labs-observation',
|
||||
|
|
@ -13,186 +8,23 @@ import {formatDate} from '@angular/common';
|
|||
styleUrls: ['./report-labs-observation.component.scss']
|
||||
})
|
||||
export class ReportLabsObservationComponent implements OnInit {
|
||||
|
||||
@Input() observations: ResourceFhir[] = []
|
||||
@Input() observationCode: string
|
||||
@Input() observationTitle: string
|
||||
|
||||
observationModels: ObservationModel[] = []
|
||||
firstObservation: ResourceFhir = null
|
||||
// based on https://stackoverflow.com/questions/38889716/chartjs-2-stacked-bar-with-marker-on-top
|
||||
// https://stackoverflow.com/questions/62711919/chart-js-horizontal-lines-per-bar
|
||||
|
||||
|
||||
chartHeight = 60
|
||||
|
||||
barChartData =[
|
||||
// {
|
||||
// label: "Current",
|
||||
// backgroundColor: 'rgba(255, 0, 128, 1)',
|
||||
// data: [],
|
||||
// xAxisID: "x-axis-current"
|
||||
// },
|
||||
// {
|
||||
// label: "Reference",
|
||||
// backgroundColor: 'rgba(99,189,50,0.2)',
|
||||
// data: [],
|
||||
// xAxisID: "x-axis-ref"
|
||||
// },
|
||||
|
||||
|
||||
|
||||
{
|
||||
label: "Reference",
|
||||
data: [[55,102], [44,120]],
|
||||
backgroundColor: "rgba(91, 71, 251,0.6)",
|
||||
hoverBackgroundColor: "rgba(91, 71, 251,0.2)"
|
||||
},{
|
||||
label: "Current",
|
||||
data: [[80,81], [130,131]],
|
||||
borderColor: "rgba(0,0,0,1)",
|
||||
backgroundColor: "rgba(0,0,0,1)",
|
||||
hoverBackgroundColor: "rgba(0,0,0,1)",
|
||||
minBarLength: 3,
|
||||
barPercentage: 1,
|
||||
tooltip: {
|
||||
|
||||
}
|
||||
// id: "x-axis-current",
|
||||
//important settings
|
||||
|
||||
//set the width of the line ( or point )
|
||||
// pointRadius: 50,
|
||||
// don´t show line betrween points
|
||||
// showLine: false,
|
||||
//change points of line chart to line style ( little bit confusin why it´s named point anyway )
|
||||
// pointStyle: 'line',
|
||||
|
||||
//chart type
|
||||
// type: "line",
|
||||
}
|
||||
] as ChartConfiguration<'bar'>['data']['datasets']
|
||||
|
||||
barChartLabels = [] // ["2020", "2018"] //["1","2","3","4","5","6","7","8"]
|
||||
|
||||
barChartOptions = {
|
||||
indexAxis: 'y',
|
||||
legend:{
|
||||
display: false,
|
||||
},
|
||||
//add padding to fix tooltip cutoff
|
||||
layout: {
|
||||
padding: {
|
||||
left: 0,
|
||||
right: 4,
|
||||
top: 0,
|
||||
bottom: 10
|
||||
}
|
||||
},
|
||||
scales: {
|
||||
y: {
|
||||
stacked: true,
|
||||
ticks: {
|
||||
beginAtZero: true,
|
||||
fontSize: 10,
|
||||
min: 0,
|
||||
// max: 80
|
||||
},
|
||||
},
|
||||
x: {
|
||||
scaleLabel:{
|
||||
display: false,
|
||||
labelString: "xaxis",
|
||||
padding: 4,
|
||||
},
|
||||
// stacked: true,
|
||||
ticks: {
|
||||
beginAtZero: true,
|
||||
fontSize: 10,
|
||||
min: 0,
|
||||
// max: 80
|
||||
},
|
||||
|
||||
},
|
||||
}
|
||||
} as ChartConfiguration<'bar'>['options']
|
||||
|
||||
barChartColors = [
|
||||
{
|
||||
backgroundColor: 'white'
|
||||
}
|
||||
];
|
||||
|
||||
|
||||
constructor() { }
|
||||
|
||||
ngOnInit(): void {
|
||||
|
||||
let currentValues: number[] = []
|
||||
|
||||
let referenceRanges = []
|
||||
|
||||
//sort observations
|
||||
this.observations = this.observations?.sort((a, b) => a.sort_date > b.sort_date ? -1 : a.sort_date < b.sort_date ? 1 : 0)
|
||||
|
||||
if(this.observations.length > 0){
|
||||
this.firstObservation = this.observations[0]
|
||||
}
|
||||
for(let observation of this.observations){
|
||||
//get label
|
||||
this.barChartLabels.push(
|
||||
formatDate(fhirpath.evaluate(observation.resource_raw, "Observation.effectiveDateTime")[0], "mediumDate", "en-US", undefined)
|
||||
)
|
||||
|
||||
//get current value
|
||||
// let currentValue = fhirpath.evaluate(observation.resource_raw, "Observation.valueQuantity.value")[0]
|
||||
// if(currentValue != null){
|
||||
// currentValues.push([currentValue, currentValue])
|
||||
// } else {
|
||||
// currentValues.push([])
|
||||
// }
|
||||
currentValues.push(fhirpath.evaluate(observation.resource_raw, "Observation.valueQuantity.value")[0])
|
||||
|
||||
//set chart x-axis label
|
||||
let units = fhirpath.evaluate(observation.resource_raw, "Observation.valueQuantity.unit")[0]
|
||||
|
||||
//TODO: fix x-axis label
|
||||
// if(units){
|
||||
//
|
||||
// (this.barChartOptions as ChartConfiguration<'bar'>['options']).scales['x']['scaleLabel'].display = true
|
||||
// (this.barChartOptions as ChartConfiguration<'bar'>['options']).scales['y']['scaleLabel'].labelString = units
|
||||
// }
|
||||
|
||||
|
||||
//add low/high ref value blocks
|
||||
// let referenceLow = fhirpath.evaluate(observation.resource_raw, "Observation.referenceRange.low.value")[0]
|
||||
// let referenceHigh = fhirpath.evaluate(observation.resource_raw, "Observation.referenceRange.high.value")[0]
|
||||
// if (referenceLow != null && referenceHigh != null){
|
||||
// referenceRanges.push([referenceLow, referenceHigh])
|
||||
// } else {
|
||||
// referenceRanges.push([0,0])
|
||||
// }
|
||||
referenceRanges.push([
|
||||
fhirpath.evaluate(observation.resource_raw, "Observation.referenceRange.low.value")[0],
|
||||
fhirpath.evaluate(observation.resource_raw, "Observation.referenceRange.high.value")[0]
|
||||
])
|
||||
}
|
||||
|
||||
|
||||
|
||||
// @ts-ignore
|
||||
this.barChartData[0].data = referenceRanges
|
||||
this.barChartData[1].data = currentValues.map(v => [v, v])
|
||||
// this.barChartData[1].data = currentValues
|
||||
|
||||
let suggestedMax = Math.max(...currentValues) * 1.1;
|
||||
this.barChartOptions.scales['x']['suggestedMax'] = suggestedMax
|
||||
|
||||
console.log(this.observationTitle, this.barChartData[0].data, this.barChartData[1].data)
|
||||
|
||||
|
||||
if(currentValues.length > 1){
|
||||
this.chartHeight = 30 * currentValues.length
|
||||
}
|
||||
this.observationModels = this.observations.map(ob => new ObservationModel(ob.resource_raw))
|
||||
}
|
||||
|
||||
}
|
||||
|
|
|
|||
|
|
@ -14,6 +14,7 @@ import { Observable, of } from 'rxjs';
|
|||
|
||||
import R4Example1Json from "../../../lib/fixtures/r4/resources/observation/example1.json";
|
||||
import { Html as GlossaryLookupHtml } from '../glossary-lookup/glossary-lookup.stories';
|
||||
import { ObservationBarChartComponent } from '../fhir-card/common/observation-bar-chart/observation-bar-chart.component';
|
||||
|
||||
|
||||
const withHttpClientProvider: DecoratorFunction<any> = (storyFunc, context) => {
|
||||
|
|
@ -39,8 +40,8 @@ const meta: Meta<ReportLabsObservationComponent> = {
|
|||
decorators: [
|
||||
withHttpClientProvider,
|
||||
moduleMetadata({
|
||||
imports: [PipesModule, GlossaryLookupComponent, NgChartsModule, RouterTestingModule, HttpClientModule],
|
||||
declarations: [NgbCollapse],
|
||||
imports: [PipesModule, GlossaryLookupComponent, NgChartsModule, RouterTestingModule, HttpClientModule, ObservationBarChartComponent],
|
||||
declarations: [ NgbCollapse ],
|
||||
providers: [],
|
||||
})
|
||||
],
|
||||
|
|
|
|||
|
|
@ -248,8 +248,8 @@ describe('DashboardWidgetComponent', () => {
|
|||
});
|
||||
|
||||
})
|
||||
describe('Vitals - ListWidget', () => {})
|
||||
describe('Resource Aggregation - DonutWidget', () => {})
|
||||
// describe('Vitals - ListWidget', () => {})
|
||||
// describe('Resource Aggregation - DonutWidget', () => {})
|
||||
|
||||
})
|
||||
|
||||
|
|
|
|||
|
|
@ -45,7 +45,7 @@
|
|||
|
||||
$color2: $color;
|
||||
$base2: $base;
|
||||
$deg: ($perc/100*360)+deg;
|
||||
$deg: calc($perc / 100 * 360) + deg;
|
||||
$deg1: 90deg;
|
||||
$deg2: $deg;
|
||||
|
||||
|
|
@ -54,7 +54,7 @@
|
|||
$base: $color;
|
||||
$color: $base2;
|
||||
$color2: $base2;
|
||||
$deg1: ($perc/100*360+90)+deg;
|
||||
$deg1: calc($perc / 100 * 360 + 90) + deg;
|
||||
$deg2: 0deg;
|
||||
}
|
||||
|
||||
|
|
@ -66,14 +66,14 @@
|
|||
|
||||
.slice {
|
||||
&.one {
|
||||
clip: rect(0 $size $size/2 0);
|
||||
clip: rect(0 $size calc($size / 2) 0);
|
||||
-webkit-transform: rotate($deg1);
|
||||
transform: rotate($deg1);
|
||||
background: $color;
|
||||
}
|
||||
|
||||
&.two {
|
||||
clip: rect(0 $size/2 $size 0);
|
||||
clip: rect(0 calc($size / 2) $size 0);
|
||||
-webkit-transform: rotate($deg2);
|
||||
transform: rotate($deg2);
|
||||
background: $color2;
|
||||
|
|
|
|||
|
|
@ -0,0 +1,152 @@
|
|||
import { Factory } from 'fishery';
|
||||
|
||||
class ObservationR4Factory extends Factory<{}> {
|
||||
|
||||
valueString(value?: string) {
|
||||
return this.params({
|
||||
valueQuantity: null,
|
||||
valueString: value || '5.5mmol/l'
|
||||
})
|
||||
}
|
||||
|
||||
referenceRange(high?: number, low?: number) {
|
||||
return this.params({
|
||||
referenceRange: [
|
||||
{
|
||||
low: {
|
||||
value: low || 3.1,
|
||||
unit: 'mmol/l',
|
||||
system: 'http://unitsofmeasure.org',
|
||||
code: 'mmol/L'
|
||||
},
|
||||
high: {
|
||||
value: high || 6.5,
|
||||
unit: 'mmol/l',
|
||||
system: 'http://unitsofmeasure.org',
|
||||
code: 'mmol/L'
|
||||
}
|
||||
}
|
||||
]
|
||||
})
|
||||
}
|
||||
|
||||
referenceRangeOnlyHigh(value?: number) {
|
||||
return this.params({
|
||||
referenceRange: [
|
||||
{
|
||||
high: {
|
||||
value: value || 6.5,
|
||||
unit: 'mmol/l',
|
||||
system: 'http://unitsofmeasure.org',
|
||||
code: 'mmol/L'
|
||||
}
|
||||
}
|
||||
]
|
||||
});
|
||||
};
|
||||
|
||||
referenceRangeOnlyLow(value?: number) {
|
||||
return this.params({
|
||||
referenceRange: [
|
||||
{
|
||||
low: {
|
||||
value: value || 3.1,
|
||||
unit: 'mmol/l',
|
||||
system: 'http://unitsofmeasure.org',
|
||||
code: 'mmol/L'
|
||||
}
|
||||
}
|
||||
]
|
||||
});
|
||||
};
|
||||
|
||||
referenceRangeString(range?: string) {
|
||||
return this.params({
|
||||
referenceRange: [
|
||||
{
|
||||
text: range || '3.1mmol/l-6.3mmol/l'
|
||||
}
|
||||
]
|
||||
});
|
||||
};
|
||||
|
||||
referenceRangeStringOnlyHigh(high?: string) {
|
||||
return this.params({
|
||||
referenceRange: [
|
||||
{
|
||||
text: high || '<=5.5'
|
||||
}
|
||||
]
|
||||
});
|
||||
};
|
||||
|
||||
referenceRangeStringOnlyLow(low?: | string) {
|
||||
return this.params({
|
||||
referenceRange: [
|
||||
{
|
||||
text: low || '>=4.5'
|
||||
}
|
||||
]
|
||||
});
|
||||
};
|
||||
}
|
||||
|
||||
export const observationR4Factory = ObservationR4Factory.define(() => (
|
||||
{
|
||||
resourceType: 'Observation',
|
||||
id: 'f001',
|
||||
text: {
|
||||
status: 'generated',
|
||||
div: "<div xmlns=\'http://www.w3.org/1999/xhtml\'><p><b>Generated Narrative with Details</b></p><p><b>id</b>: example</p><p><b>status</b>: final</p><p><b>category</b>: Vital Signs <span>(Details : {http://terminology.hl7.org/CodeSystem/observation-category code 'vital-signs' = 'Vital Signs', given as 'Vital Signs'})</span></p><p><b>code</b>: Body Weight <span>(Details : {LOINC code '29463-7' = 'Body weight', given as 'Body Weight'}; {LOINC code '3141-9' = 'Body weight Measured', given as 'Body weight Measured'}; {SNOMED CT code '27113001' = 'Body weight', given as 'Body weight'}; {http://acme.org/devices/clinical-codes code 'body-weight' = 'body-weight', given as 'Body Weight'})</span></p><p><b>subject</b>: <a>Patient/example</a></p><p><b>encounter</b>: <a>Encounter/example</a></p><p><b>effective</b>: 28/03/2016</p><p><b>value</b>: 185 lbs<span> (Details: UCUM code [lb_av] = 'lb_av')</span></p></div>"
|
||||
},
|
||||
identifier: [
|
||||
{
|
||||
use: 'official',
|
||||
system: 'http://www.bmc.nl/zorgportal/identifiers/observations',
|
||||
value: '6323'
|
||||
}
|
||||
],
|
||||
status: 'final',
|
||||
code: {
|
||||
coding: [
|
||||
{
|
||||
system: 'http://loinc.org',
|
||||
code: '15074-8',
|
||||
display: 'Glucose [Moles/volume] in Blood'
|
||||
}
|
||||
]
|
||||
},
|
||||
subject: {
|
||||
reference: 'Patient/f001',
|
||||
display: 'P. van de Heuvel'
|
||||
},
|
||||
effectiveDateTime: '2016-03-28',
|
||||
effectivePeriod: {
|
||||
start: '2013-04-02T09:30:10+01:00'
|
||||
},
|
||||
issued: '2013-04-03T15:30:10+01:00',
|
||||
performer: [
|
||||
{
|
||||
reference: 'Practitioner/f005',
|
||||
display: 'A. Langeveld'
|
||||
}
|
||||
],
|
||||
valueQuantity: {
|
||||
value: 6.3,
|
||||
unit: 'mmol/l',
|
||||
system: 'http://unitsofmeasure.org',
|
||||
code: 'mmol/L'
|
||||
},
|
||||
interpretation: [
|
||||
{
|
||||
coding: [
|
||||
{
|
||||
system: 'http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation',
|
||||
code: 'H',
|
||||
display: 'High'
|
||||
}
|
||||
]
|
||||
}
|
||||
],
|
||||
}
|
||||
));
|
||||
|
|
@ -1,7 +1,95 @@
|
|||
import { ObservationModel } from './observation-model';
|
||||
import { fhirVersions } from '../constants';
|
||||
import { observationR4Factory } from 'src/lib/fixtures/factories/r4/resources/observation-r4-factory';
|
||||
|
||||
describe('ObservationModel', () => {
|
||||
it('should create an instance', () => {
|
||||
expect(new ObservationModel({})).toBeTruthy();
|
||||
});
|
||||
|
||||
describe('parsing value', () => {
|
||||
it('reads from valueQuantity.value if set', () => {
|
||||
let observation = new ObservationModel(observationR4Factory.build(), fhirVersions.R4);
|
||||
|
||||
expect(observation.value_quantity_value).toEqual(6.3);
|
||||
});
|
||||
|
||||
it('parses valueString correctly when value is a number if valueQuantity.value not set', () => {
|
||||
let observation = new ObservationModel(observationR4Factory.valueString().build(), fhirVersions.R4);
|
||||
|
||||
expect(observation.value_quantity_value).toEqual(5.5);
|
||||
});
|
||||
});
|
||||
|
||||
describe('parsing unit', () => {
|
||||
it('reads from valueQuantity.unit if set', () => {
|
||||
let observation = new ObservationModel(observationR4Factory.build(), fhirVersions.R4);
|
||||
|
||||
expect(observation.value_quantity_unit).toEqual('mmol/l');
|
||||
});
|
||||
|
||||
it('reads from valueString if valueQuantity.unit not set', () => {
|
||||
let observation = new ObservationModel(observationR4Factory.valueString().build(), fhirVersions.R4);
|
||||
|
||||
expect(observation.value_quantity_unit).toEqual('mmol/l');
|
||||
});
|
||||
});
|
||||
|
||||
describe('parsing reference range', () => {
|
||||
it('parses referenceRange correctly when high and low are not set', () => {
|
||||
let observation = new ObservationModel(observationR4Factory.build(), fhirVersions.R4);
|
||||
|
||||
expect(observation.reference_range).toEqual({ low: null, high: null });
|
||||
});
|
||||
|
||||
it('parses referenceRange correctly when high and low are set', () => {
|
||||
let observation = new ObservationModel(observationR4Factory.referenceRange().build(), fhirVersions.R4);
|
||||
|
||||
expect(observation.reference_range).toEqual({ low: 3.1, high: 6.5 });
|
||||
});
|
||||
|
||||
describe('when referenceRange.text is set', () => {
|
||||
it('parses values correctly when there is a high and a low', () => {
|
||||
let tests = [
|
||||
{ text: '50.3-109.2', result: { low: 50.3, high: 109.2 } },
|
||||
{ text: '50.3mg/L-109.2mg/L', result: { low: 50.3, high: 109.2 } },
|
||||
{ text: '50.3-109.2mg/L', result: { low: 50.3, high: 109.2 } },
|
||||
{ text: '50.3mg/L-109.2', result: { low: 50.3, high: 109.2 } }
|
||||
]
|
||||
|
||||
for(let test of tests) {
|
||||
let observation = new ObservationModel(observationR4Factory.referenceRangeString(test.text).build(), fhirVersions.R4);
|
||||
expect(observation.reference_range).toEqual(test.result)
|
||||
}
|
||||
});
|
||||
|
||||
it('parses values correctly when there is only a low', () => {
|
||||
let tests = [
|
||||
{ text: '>50.3', result: { low: 50.3, high: null } },
|
||||
{ text: '>50.3mg/L', result: { low: 50.3, high: null } },
|
||||
{ text: '>=50.3', result: { low: 50.3, high: null } },
|
||||
{ text: '>=50.3mg/L', result: { low: 50.3, high: null } }
|
||||
]
|
||||
|
||||
for(let test of tests) {
|
||||
let observation = new ObservationModel(observationR4Factory.referenceRangeStringOnlyLow(test.text).build(), fhirVersions.R4);
|
||||
expect(observation.reference_range).toEqual(test.result)
|
||||
}
|
||||
});
|
||||
|
||||
it('parses values correctly when there is only a high', () => {
|
||||
let tests = [
|
||||
{ text: '<109.2', result: { low: null, high: 109.2 } },
|
||||
{ text: '<109.2mg/L', result: { low: null, high: 109.2 } },
|
||||
{ text: '<=109.2', result: { low: null, high: 109.2 } },
|
||||
{ text: '<=109.2mg/L', result: { low: null, high: 109.2 } }
|
||||
]
|
||||
|
||||
for(let test of tests) {
|
||||
let observation = new ObservationModel(observationR4Factory.referenceRangeStringOnlyHigh(test.text).build(), fhirVersions.R4);
|
||||
expect(observation.reference_range).toEqual(test.result)
|
||||
}
|
||||
});
|
||||
});
|
||||
});
|
||||
});
|
||||
|
|
|
|||
|
|
@ -2,17 +2,20 @@ import {fhirVersions, ResourceType} from '../constants';
|
|||
import * as _ from "lodash";
|
||||
import {CodableConceptModel, hasValue} from '../datatypes/codable-concept-model';
|
||||
import {ReferenceModel} from '../datatypes/reference-model';
|
||||
import {CodingModel} from '../datatypes/coding-model';
|
||||
import {FastenDisplayModel} from '../fasten/fasten-display-model';
|
||||
import {FastenOptions} from '../fasten/fasten-options';
|
||||
|
||||
interface referenceRangeHash {
|
||||
low: number | null,
|
||||
high: number | null
|
||||
}
|
||||
|
||||
export class ObservationModel extends FastenDisplayModel {
|
||||
code: CodableConceptModel | undefined
|
||||
effective_date: string
|
||||
code_coding_display: string
|
||||
code_text: string
|
||||
value_quantity_value: number | string
|
||||
value_quantity_value: number
|
||||
value_quantity_unit: string
|
||||
status: string
|
||||
value_codeable_concept_text: string
|
||||
|
|
@ -20,25 +23,19 @@ export class ObservationModel extends FastenDisplayModel {
|
|||
value_codeable_concept_coding: string
|
||||
value_quantity_value_number: number
|
||||
subject: ReferenceModel | undefined
|
||||
reference_range: {
|
||||
low: {
|
||||
value: number
|
||||
}
|
||||
high: {
|
||||
value: number
|
||||
}
|
||||
}[] | undefined
|
||||
fhirResource: any
|
||||
reference_range: referenceRangeHash
|
||||
|
||||
constructor(fhirResource: any, fhirVersion?: fhirVersions, fastenOptions?: FastenOptions) {
|
||||
super(fastenOptions)
|
||||
this.fhirResource = fhirResource
|
||||
this.source_resource_type = ResourceType.Observation
|
||||
this.effective_date = _.get(fhirResource, 'effectiveDateTime');
|
||||
this.code = _.get(fhirResource, 'code');
|
||||
this.code_coding_display = _.get(fhirResource, 'code.coding.0.display');
|
||||
this.code_text = _.get(fhirResource, 'code.text', '');
|
||||
this.value_quantity_value = _.get(fhirResource, 'valueQuantity.value', '');
|
||||
// const issued = _.get(fhirResource, 'issued', '');
|
||||
this.value_quantity_unit = _.get(fhirResource, 'valueQuantity.unit', '');
|
||||
this.value_quantity_value = this.parseValue();
|
||||
this.value_quantity_unit = this.parseUnit();
|
||||
this.status = _.get(fhirResource, 'status', '');
|
||||
this.value_codeable_concept_text = _.get(
|
||||
fhirResource,
|
||||
|
|
@ -54,7 +51,97 @@ export class ObservationModel extends FastenDisplayModel {
|
|||
[],
|
||||
);
|
||||
|
||||
this.reference_range = _.get(fhirResource, 'referenceRange', []);
|
||||
this.reference_range = this.parseReferenceRange();
|
||||
this.subject = _.get(fhirResource, 'subject');
|
||||
}
|
||||
|
||||
private parseValue(): number {
|
||||
// TODO: parseFloat would return NaN if it can't parse. Need to check and make sure that doesn't cause issues
|
||||
return this.valueQuantity() || parseFloat(this.valueString())
|
||||
}
|
||||
|
||||
private parseUnit(): string {
|
||||
return this.valueUnit() || this.valueStringUnit()
|
||||
}
|
||||
|
||||
// Look for the observation's numeric value. Use this first before valueString which is a backup if this can't be found.
|
||||
private valueQuantity(): number {
|
||||
// debugger
|
||||
return _.get(this.fhirResource, "valueQuantity.value");
|
||||
}
|
||||
|
||||
// Look for the observation's numeric value. Use this first before valueStringUnit which is a backup if this can't be found.
|
||||
private valueUnit(): string {
|
||||
return _.get(this.fhirResource, "valueQuantity.unit");
|
||||
}
|
||||
|
||||
// Use if valueQuantity can't be found. This will check for valueString and attempt to parse the first number in the string
|
||||
private valueString(): string {
|
||||
return _.get(this.fhirResource, "valueString")?.match(/(?<value>[\d.]*)(?<text>.*)/).groups.value;
|
||||
}
|
||||
|
||||
// Use if valueUnit can't be found.
|
||||
private valueStringUnit(): string {
|
||||
return _.get(this.fhirResource, "valueString")?.match(/(?<value>[\d.]*)(?<text>.*)/).groups.text;
|
||||
}
|
||||
|
||||
private referenceRangeFromString(str: string): referenceRangeHash {
|
||||
let matches = str?.match(/(?<value1>[\d.]*)?(?<operator>[^\d]*)?(?<value2>[\d.]*)?/)
|
||||
|
||||
if(!matches) {
|
||||
return { low: null, high: null }
|
||||
}
|
||||
|
||||
if (!!matches.groups['value1'] && !!matches.groups['value2']) {
|
||||
return {
|
||||
low: parseFloat(matches.groups['value1']),
|
||||
high: parseFloat(matches.groups['value2'])
|
||||
}
|
||||
}
|
||||
|
||||
if (['<', '<='].includes(matches.groups['operator'])) {
|
||||
return {
|
||||
low: null,
|
||||
high: parseFloat(matches.groups['value2'])
|
||||
}
|
||||
} else { // > >=
|
||||
return {
|
||||
low: parseFloat(matches.groups['value2']),
|
||||
high: null
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
private parseReferenceRange(): referenceRangeHash {
|
||||
let refRangeObject = _.get(this.fhirResource, "referenceRange.0")
|
||||
|
||||
if (refRangeObject?.low || refRangeObject?.high) {
|
||||
return {
|
||||
low: refRangeObject.low?.value,
|
||||
high: refRangeObject.high?.value
|
||||
}
|
||||
}
|
||||
|
||||
return this.referenceRangeFromString(refRangeObject?.text)
|
||||
}
|
||||
|
||||
public referenceRangeDisplay(): string {
|
||||
// If text was sent just show it since we aren't storing difference between <= and <.
|
||||
// Likely doesn't really matter, but might as well if we have that data.
|
||||
if (_.get(this.fhirResource, 'referenceRange.0.text')) {
|
||||
return _.get(this.fhirResource, 'referenceRange.0.text');
|
||||
}
|
||||
|
||||
let refRange = this.parseReferenceRange()
|
||||
|
||||
if (refRange['low'] && refRange['high']) {
|
||||
return `${refRange['low']}\u{2013}${refRange['high']}`;
|
||||
} else if (refRange['low']) {
|
||||
return `> ${refRange['low']}`;
|
||||
} else if (refRange['high']) {
|
||||
return `< ${refRange['high']}`;
|
||||
}
|
||||
|
||||
return '';
|
||||
}
|
||||
}
|
||||
|
|
|
|||
|
|
@ -4970,10 +4970,10 @@ chardet@^0.7.0:
|
|||
resolved "https://registry.npmjs.org/chardet/-/chardet-0.7.0.tgz#90094849f0937f2eedc2425d0d28a9e5f0cbad9e"
|
||||
integrity sha512-mT8iDcrh03qDGRRmoA2hmBJnxpllMR+0/0qlzjqZES6NdiWDcZkCNAk4rPFZ9Q85r27unkiNNg8ZOiwZXBHwcA==
|
||||
|
||||
chart.js@^4.0.1:
|
||||
version "4.3.0"
|
||||
resolved "https://registry.npmjs.org/chart.js/-/chart.js-4.3.0.tgz#ac363030ab3fec572850d2d872956f32a46326a1"
|
||||
integrity sha512-ynG0E79xGfMaV2xAHdbhwiPLczxnNNnasrmPEXriXsPJGjmhOBYzFVEsB65w2qMDz+CaBJJuJD0inE/ab/h36g==
|
||||
chart.js@^4.4.2:
|
||||
version "4.4.2"
|
||||
resolved "https://registry.yarnpkg.com/chart.js/-/chart.js-4.4.2.tgz#95962fa6430828ed325a480cc2d5f2b4e385ac31"
|
||||
integrity sha512-6GD7iKwFpP5kbSD4MeRRRlTnQvxfQREy36uEtm1hzHzcOqwWx0YEHuspuoNlslu+nciLIB7fjjsHkUv/FzFcOg==
|
||||
dependencies:
|
||||
"@kurkle/color" "^0.3.0"
|
||||
|
||||
|
|
@ -5592,7 +5592,7 @@ debug@2.6.9, debug@^2.6.9:
|
|||
dependencies:
|
||||
ms "2.0.0"
|
||||
|
||||
debug@4, debug@4.3.4, debug@^4.1.0, debug@^4.1.1, debug@^4.3.2, debug@^4.3.3, debug@^4.3.4, debug@~4.3.1, debug@~4.3.2:
|
||||
debug@4, debug@4.3.4, debug@^4.1.0, debug@^4.1.1, debug@^4.3.2, debug@^4.3.3, debug@^4.3.4, debug@~4.3.1, debug@~4.3.2, debug@~4.3.4:
|
||||
version "4.3.4"
|
||||
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|
||||
integrity sha512-wBuoj1BDpC6ZQ1B7DWQBYVLphPWkm8i9Y0/3YdHjHKHiohOJ1ws+3OccDWtH+PoC9DZD5WOTrJvNbWvjS6JWaA==
|
||||
ws@~8.11.0:
|
||||
version "8.11.0"
|
||||
resolved "https://registry.yarnpkg.com/ws/-/ws-8.11.0.tgz#6a0d36b8edfd9f96d8b25683db2f8d7de6e8e143"
|
||||
integrity sha512-HPG3wQd9sNQoT9xHyNCXoDUa+Xw/VevmY9FoHyQ+g+rrMn4j6FB4np7Z0OhdTgjx6MgQLK7jwSy1YecU1+4Asg==
|
||||
|
||||
xml2js@^0.4.17:
|
||||
version "0.4.23"
|
||||
|
|
|
|||
Loading…
Reference in New Issue