added charts (#13)
This commit is contained in:
Jason Kulatunga
GitHub
parent
918c856338
commit
c8e074ff4b
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@ -17,6 +17,9 @@
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<li class="nav-item" ngbDropdown [ngClass]="{ 'active': medicalHistory.isActive }">
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<a routerLink="/medical-history" routerLinkActive="active" #medicalHistory="routerLinkActive" class="nav-link"><fa-icon [icon]="['fas', 'book-medical']"></fa-icon> Medical History</a>
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</li>
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<li class="nav-item" ngbDropdown [ngClass]="{ 'active': labs.isActive }">
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<a routerLink="/labs" routerLinkActive="active" #labs="routerLinkActive" class="nav-link"><fa-icon [icon]="['fas', 'heart-pulse']"></fa-icon> Labs</a>
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</li>
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<li class="nav-item" ngbDropdown [ngClass]="{ 'active': sources.isActive }">
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<a routerLink="/sources" routerLinkActive="active" #sources="routerLinkActive" class="nav-link"><fa-icon [icon]="['fas', 'hospital']"></fa-icon> Sources</a>
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</li>
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@ -3,7 +3,7 @@
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<div class="row" >
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<!-- Condition Header -->
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<div class="col-6">
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{{observationTitle}}
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<span routerLink="/source/{{observations[0]?.source_id}}/resource/{{observations[0]?.source_resource_id}}">{{observationTitle}}</span>
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</div>
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<div class="col-6">
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{{observations[0] | fhirPath: "Observation.effectiveDateTime": "Observation.issued" | date}}
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@ -20,12 +20,27 @@
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<div class="row pl-3">
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<div class="col-12 mt-3 mb-2">
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<p>
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<strong>Test Code (loinc):</strong> {{observationCode}} <br/>
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<strong>Short Name:</strong> {{observations[0] | fhirPath: "Observation.code.text"}} <br/>
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<strong>Result:</strong> {{observations[0] | fhirPath: "Observation.valueQuantity.value"}} {{observations[0] | fhirPath: "Observation.valueQuantity.unit"}} <br/>
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<br/>
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<strong>Latest Test Date:</strong> {{observations[0] | fhirPath: "Observation.effectiveDateTime": "Observation.issued" | date}} <br/>
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<strong>Ordered By:</strong> {{observations[0] | fhirPath: "Observation.encounter.display"}} <br/>
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<strong>Notes:</strong>
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<strong>LOINC Code:</strong> {{observationCode}} <br/>
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<strong>Notes:</strong> {{observations[0] | fhirPath: "Observation.note.text"}}
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<br/>
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<br/>
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<a class="cursor-pointer tx-indigo" (click)="collapse.toggle()">show all</a>
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</p>
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<div #collapse="ngbCollapse" [ngbCollapse]="true">
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<ul>
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<li class="cursor-pointer tx-indigo" *ngFor="let observation of observations" routerLink="/source/{{observation?.source_id}}/resource/{{observation?.source_resource_id}}">Observation: {{observation | fhirPath: "Observation.effectiveDateTime": "Observation.issued" | date}}</li>
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</ul>
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</div>
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</div>
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</div>
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@ -33,20 +48,20 @@
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</div>
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<div class="col-6 bg-gray-100">
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<div class="row">
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<div class="col-12 mt-3">
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<p>
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<small>
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Troponin I is a part of the troponin complex. It binds to actin in thin myofilaments to hold the actin-tropomyosin complex in place. Because of it myosin cannot bind actin in relaxed muscle. When calcium binds to the Troponin C it causes conformational changes which lead to dislocation of troponin I and finally tropomyosin leaves the binding site for myosin on actin leading to contraction of muscle. The letter I is given due to its inhibitory character.
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Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat. Duis aute irure dolor in reprehenderit in voluptate velit esse cillum dolore eu fugiat nulla pariatur. Excepteur sint occaecat cupidatat non proident, sunt in culpa qui officia deserunt mollit anim id est laborum.
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</small>
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</p>
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<ng-container *ngFor="let observation of observations">
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<div routerLink="/source/{{observation?.source_id}}/resource/{{observation?.source_resource_id}}" class="col-6 mt-3 mb-2 tx-indigo">
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<strong>{{observation | fhirPath: "Observation.valueQuantity.value" }}</strong>
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</div>
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</ng-container>
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<div class="col-12">
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<canvas baseChart [height]="chartHeight" [chartType]="'horizontalBar'" [datasets]="barChartData" [labels]="barChartLabels" [options]="barChartOptions"></canvas>
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</div>
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</div>
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</div>
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</div>
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@ -1,5 +1,11 @@
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import {Component, Input, OnInit} from '@angular/core';
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import {ResourceFhir} from '../../models/fasten/resource_fhir';
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import {ChartOptions} from 'chart.js';
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// import { ChartConfiguration, ChartData, ChartEvent, ChartType } from 'chart.js';
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// import { BaseChartDirective } from 'ng2-charts';
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import * as fhirpath from 'fhirpath';
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import {formatDate} from '@angular/common';
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@Component({
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selector: 'app-report-labs-observation',
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@ -12,10 +18,179 @@ export class ReportLabsObservationComponent implements OnInit {
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@Input() observationCode: string
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@Input() observationTitle: string
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// based on https://stackoverflow.com/questions/38889716/chartjs-2-stacked-bar-with-marker-on-top
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// https://stackoverflow.com/questions/62711919/chart-js-horizontal-lines-per-bar
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chartHeight = 45
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barChartData =[
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// {
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// label: "Current",
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// backgroundColor: 'rgba(255, 0, 128, 1)',
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// data: [],
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// xAxisID: "x-axis-current"
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// },
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// {
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// label: "Reference",
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// backgroundColor: 'rgba(99,189,50,0.2)',
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// data: [],
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// xAxisID: "x-axis-ref"
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// },
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{
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label: "Reference",
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data: [[55,102], [44,120]],
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backgroundColor: "rgba(91, 71, 251,0.6)",
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hoverBackgroundColor: "rgba(91, 71, 251,0.2)"
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},{
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label: "Current",
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data: [[80,81], [130,131]],
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borderColor: "rgba(0,0,0,1)",
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backgroundColor: "rgba(0,0,0,1)",
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hoverBackgroundColor: "rgba(0,0,0,1)",
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minBarLength: 3,
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barPercentage: 1,
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tooltip: {
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}
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// id: "x-axis-current",
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//important settings
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//set the width of the line ( or point )
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// pointRadius: 50,
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// don´t show line betrween points
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// showLine: false,
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//change points of line chart to line style ( little bit confusin why it´s named point anyway )
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// pointStyle: 'line',
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//chart type
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// type: "line",
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}
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]
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barChartLabels = [] // ["2020", "2018"] //["1","2","3","4","5","6","7","8"]
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barChartOptions = {
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legend:{
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display: false,
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},
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//add padding to fix tooltip cutoff
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layout: {
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padding: {
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left: 0,
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right: 4,
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top: 0,
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bottom: 10
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}
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},
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scales: {
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yAxes: [{
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stacked: true,
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ticks: {
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beginAtZero: true,
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fontSize: 10,
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min: 0,
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// max: 80
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},
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}],
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xAxes: [{
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scaleLabel:{
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display: false,
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labelString: "xaxis",
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padding: 4,
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},
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// stacked: true,
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ticks: {
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beginAtZero: true,
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fontSize: 10,
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min: 0,
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// max: 80
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},
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}],
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}
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// xAxes: [{
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// id: "x-axis-current",
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// stacked: true,
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// // barPercentage: 0.6,
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// ticks: {
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// beginAtZero:true,
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// fontSize: 11
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// }
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// },{
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// id: "x-axis-ref",
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// stacked: true,
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// ticks: {
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// beginAtZero:true,
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// fontSize: 11
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// }
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// // offset: true,
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//
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// // display: false,
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// // gridLines: {
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// // offsetGridLines: true
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// // }
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// }]
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// },
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// legend: {
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// display: false
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// },
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// elements: {
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// point: {
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// radius: 0
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// }
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// }
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} as ChartOptions
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barChartColors = [
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{
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backgroundColor: 'white'
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}
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];
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constructor() { }
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ngOnInit(): void {
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let currentValues = []
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let referenceRanges = []
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for(let observation of this.observations){
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//get label
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this.barChartLabels.push(
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formatDate(fhirpath.evaluate(observation.resource_raw, "Observation.effectiveDateTime")[0], "mediumDate", "en-US", undefined)
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)
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//get current value
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currentValues.push(fhirpath.evaluate(observation.resource_raw, "Observation.valueQuantity.value")[0])
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//set chart x-axis label
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let units = fhirpath.evaluate(observation.resource_raw, "Observation.valueQuantity.unit")[0]
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if(units){
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this.barChartOptions.scales.xAxes[0].scaleLabel.display = true
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this.barChartOptions.scales.xAxes[0].scaleLabel.labelString = units
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}
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//add low/high ref value blocks
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referenceRanges.push([
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fhirpath.evaluate(observation.resource_raw, "Observation.referenceRange.low.value")[0],
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fhirpath.evaluate(observation.resource_raw, "Observation.referenceRange.high.value")[0]
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])
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}
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// @ts-ignore
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this.barChartData[0].data = referenceRanges
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this.barChartData[1].data = currentValues.map(v => [v, v])
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if(currentValues.length > 1){
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this.chartHeight = 30 * currentValues.length
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}
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}
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}
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@ -1,6 +1,6 @@
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<div class="card card-dashboard-seven mb-3">
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<div class="card-header tx-medium">
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<div class="row" routerLink="/source/{{condition?.source_id}}/resource/{{condition?.source_resource_id}}">
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<div class="row cursor-pointer" routerLink="/source/{{condition?.source_id}}/resource/{{condition?.source_resource_id}}">
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<!-- Condition Header -->
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<div class="col-6">
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{{condition | fhirPath: "Condition.code.text.first()":"Condition.code.coding.display.first()"}}
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@ -48,6 +48,15 @@
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<!-- </div>-->
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</div>
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<ng-container *ngIf="condition.related_resources.length > 0">
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<a class="cursor-pointer tx-indigo" (click)="collapse.toggle()">show all</a>
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<div #collapse="ngbCollapse" [ngbCollapse]="true">
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<ul>
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<li class="cursor-pointer tx-indigo" *ngFor="let resource of condition.related_resources" routerLink="/source/{{resource?.source_id}}/resource/{{resource?.source_resource_id}}">Resource: {{resource.source_resource_type}}/{{resource.source_resource_id}}</li>
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</ul>
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</div>
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</ng-container>
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</div>
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@ -41,6 +41,7 @@ import { TreeModule } from '@circlon/angular-tree-component';
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import {FilterPipe} from '../pipes/filter.pipe';
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import { ReportMedicalHistoryConditionComponent } from './report-medical-history-condition/report-medical-history-condition.component';
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import { ReportLabsObservationComponent } from './report-labs-observation/report-labs-observation.component';
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import { ChartsModule } from 'ng2-charts';
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@NgModule({
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imports: [
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@ -50,6 +51,7 @@ import { ReportLabsObservationComponent } from './report-labs-observation/report
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NgbModule,
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MomentModule,
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TreeModule,
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ChartsModule
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],
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declarations: [
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ComponentsSidebarComponent,
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@ -3,7 +3,7 @@
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<div class="az-content-body">
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<!-- Header Row -->
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<report-header [reportHeaderTitle]="'Medical History'"></report-header>
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<report-header [reportHeaderTitle]="'Medical History'" [reportHeaderSubTitle]="'Organized by conditions, describes the scope and breadth of medical care'"></report-header>
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<!-- Editor Button -->
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@ -3,10 +3,10 @@
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<div class="az-content-body">
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<!-- Header Row -->
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<report-header [reportHeaderTitle]="'Labs'"></report-header>
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<report-header [reportHeaderTitle]="'Labs'" [reportHeaderSubTitle]="'The Lab report turns data into meaningful information'" ></report-header>
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<ng-container *ngIf="!isEmptyReport; else emptyReport">
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<!-- Observations Title -->
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<div class="row mt-5 mb-3">
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<div class="col-6">
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@ -20,6 +20,25 @@
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[observationCode]="observationGroup.key"
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[observationTitle]="observationGroupTitles[observationGroup.key]"
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></app-report-labs-observation>
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</ng-container>
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<ng-template #emptyReport>
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<div class="d-flex align-items-center" style="height:100%">
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<div class="modal-body tx-center pd-y-20 pd-x-20">
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<h4 class="tx-purple mg-b-20">No Lab Data Found!</h4>
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<p class="mg-b-20 mg-x-20">
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Fasten was unable to find any lab data from your connected sources. You may need to connect another source to import your Lab data.
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</p>
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<p class="mg-b-20 mg-x-20">
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Click below to add a new healthcare provider to Fasten.
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</p>
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<button [routerLink]="'/sources'" type="button" class="btn btn-purple pd-x-25">Add Source</button>
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</div><!-- modal-body -->
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</div>
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</ng-template>
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</div>
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</div>
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@ -14,12 +14,17 @@ export class ReportLabsComponent implements OnInit {
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observationGroups: {[key: string]: ResourceFhir[]} = {}
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observationGroupTitles: {[key: string]: string} = {}
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loading = true
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isEmptyReport = false
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constructor(
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private fastenApi: FastenApiService,
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) { }
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ngOnInit(): void {
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this.fastenApi.getResources("Observation").subscribe(results => {
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this.loading = false
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results = results || []
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console.log("ALL OBSERVATIONS", results)
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//loop though all observations, group by "code.system": "http://loinc.org"
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@ -31,18 +36,21 @@ export class ReportLabsComponent implements OnInit {
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if(!this.observationGroupTitles[observationGroup]){
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this.observationGroupTitles[observationGroup] = fhirpath.evaluate(observation.resource_raw, "Observation.code.coding.where(system='http://loinc.org').first().display")[0]
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}
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}
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//TODO: sort observation groups
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// this.observationGroups = results
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//
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// //populate a lookup table with all resources
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// for (let condition of this.conditions) {
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// this.recPopulateResourceLookup(condition)
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// }
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this.isEmptyReport = !!!results.length
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}, error => {
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this.loading = false
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this.isEmptyReport = true
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})
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}
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isEmpty(obj: any) {
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return Object.keys(obj).length === 0;
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}
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}
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