Working nextgen api.

Adding platform_type key for use in filters.
fixing docker-compose file referencing couchdb.

CONTRIBUTING.md

@@ -47,11 +47,10 @@ make backend-test
 
 # Start Development Environment
 
-To run Fasten from source, you'll need to create 3 separate processes:
+To run Fasten from source, you'll need to create 2 separate processes:
 
 - Angular Frontend
 - Go Backend
-- CouchDB Database
 
 First we'll create a development config file (`config.dev.yaml`)
 

docker-compose.yml

@@ -1,16 +1,17 @@
 version: "3.9"
 services:
-  couchdb:
+  fasten:
+    # NOTE: only developers need to build Fasten from source
+    # For production, use the pre-built image from GitHub Packages
+    # ghcr.io/fastenhealth/fasten-onprem:main
     build:
       context: .
       dockerfile: Dockerfile
-#    environment:
+      args:
-#      - COUCHDB_USER=admin
+        - FASTEN_ENV=prod
-#      - COUCHDB_PASSWORD=password
+#        - FASTEN_ENV=sandbox
     ports:
       - "9090:8080"
-      - "5984:5984"
     volumes:
-      - ./.couchdb/data:/opt/couchdb/data
+      - ./db:/opt/fasten/db
-      - ./.couchdb/config:/opt/couchdb/etc/local.d
 #      - ./config.example.yaml:/opt/fasten/config/config.yaml

frontend/src/app/models/fasten/metadata-source.ts

@@ -1,4 +1,5 @@
 export class MetadataSource {
+  platform_type: string
   source_type: string
   display: string
   category: string[]

frontend/src/app/pages/dashboard/dashboard.component.ts

@@ -43,6 +43,7 @@ export class DashboardComponent implements OnInit {
       this.metadataSource = metadataSource
       this.metadataSource["manual"] = {
         "source_type": "manual",
+        "platform_type": "manual",
         "display": "Manual",
         "category": ["Manual"],
         "hidden": false,

frontend/src/app/pages/medical-sources/medical-sources.component.ts

@@ -218,7 +218,14 @@ export class MedicalSourcesComponent implements OnInit {
           console.log("NO PATIENT ID present, decoding jwt to extract patient")
           //const introspectionResp = await Oauth.introspectionRequest(as, client, payload.access_token)
           //console.log(introspectionResp)
-          payload.patient = this.jwtDecode(payload.id_token)["profile"].replace(/^(Patient\/)/,'')
+          let decodedIdToken = this.jwtDecode(payload.id_token)
+          //nextGen uses fhirUser instead of profile.
+          payload.patient = decodedIdToken["profile"] || decodedIdToken["fhirUser"]
+
+          if(payload.patient){
+            payload.patient = payload.patient.replace(/^(Patient\/)/,'')
+          }
+
         }