238 lines
10 KiB
Go
238 lines
10 KiB
Go
// THIS FILE IS GENERATED BY https://github.com/fastenhealth/fasten-onprem/blob/main/backend/pkg/models/database/generate.go
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// PLEASE DO NOT EDIT BY HAND
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package database
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import (
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"encoding/json"
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"fmt"
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goja "github.com/dop251/goja"
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models "github.com/fastenhealth/fasten-onprem/backend/pkg/models"
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datatypes "gorm.io/datatypes"
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"time"
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)
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type FhirSpecimen struct {
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models.ResourceBase
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// The accession number associated with the specimen
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// https://hl7.org/fhir/r4/search.html#token
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Accession datatypes.JSON `gorm:"column:accession;type:text;serializer:json" json:"accession,omitempty"`
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// The code for the body site from where the specimen originated
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// https://hl7.org/fhir/r4/search.html#token
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Bodysite datatypes.JSON `gorm:"column:bodysite;type:text;serializer:json" json:"bodysite,omitempty"`
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// The date the specimen was collected
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// https://hl7.org/fhir/r4/search.html#date
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Collected *time.Time `gorm:"column:collected;type:datetime" json:"collected,omitempty"`
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// Who collected the specimen
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// https://hl7.org/fhir/r4/search.html#reference
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Collector datatypes.JSON `gorm:"column:collector;type:text;serializer:json" json:"collector,omitempty"`
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// The kind of specimen container
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// https://hl7.org/fhir/r4/search.html#token
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Container datatypes.JSON `gorm:"column:container;type:text;serializer:json" json:"container,omitempty"`
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// The unique identifier associated with the specimen container
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// https://hl7.org/fhir/r4/search.html#token
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ContainerId datatypes.JSON `gorm:"column:containerId;type:text;serializer:json" json:"containerId,omitempty"`
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// The unique identifier associated with the specimen
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// https://hl7.org/fhir/r4/search.html#token
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Identifier datatypes.JSON `gorm:"column:identifier;type:text;serializer:json" json:"identifier,omitempty"`
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// Language of the resource content
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// https://hl7.org/fhir/r4/search.html#token
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Language datatypes.JSON `gorm:"column:language;type:text;serializer:json" json:"language,omitempty"`
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// When the resource version last changed
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// https://hl7.org/fhir/r4/search.html#date
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MetaLastUpdated *time.Time `gorm:"column:metaLastUpdated;type:datetime" json:"metaLastUpdated,omitempty"`
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// Profiles this resource claims to conform to
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// https://hl7.org/fhir/r4/search.html#reference
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MetaProfile datatypes.JSON `gorm:"column:metaProfile;type:text;serializer:json" json:"metaProfile,omitempty"`
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// Tags applied to this resource
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// https://hl7.org/fhir/r4/search.html#token
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MetaTag datatypes.JSON `gorm:"column:metaTag;type:text;serializer:json" json:"metaTag,omitempty"`
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// Tags applied to this resource
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// This is a primitive string literal (`keyword` type). It is not a recognized SearchParameter type from https://hl7.org/fhir/r4/search.html, it's Fasten Health-specific
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MetaVersionId string `gorm:"column:metaVersionId;type:text" json:"metaVersionId,omitempty"`
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// The parent of the specimen
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// https://hl7.org/fhir/r4/search.html#reference
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Parent datatypes.JSON `gorm:"column:parent;type:text;serializer:json" json:"parent,omitempty"`
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// available | unavailable | unsatisfactory | entered-in-error
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// https://hl7.org/fhir/r4/search.html#token
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Status datatypes.JSON `gorm:"column:status;type:text;serializer:json" json:"status,omitempty"`
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// The subject of the specimen
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// https://hl7.org/fhir/r4/search.html#reference
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Subject datatypes.JSON `gorm:"column:subject;type:text;serializer:json" json:"subject,omitempty"`
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// Text search against the narrative
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// This is a primitive string literal (`keyword` type). It is not a recognized SearchParameter type from https://hl7.org/fhir/r4/search.html, it's Fasten Health-specific
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Text string `gorm:"column:text;type:text" json:"text,omitempty"`
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// A resource type filter
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// https://hl7.org/fhir/r4/search.html#special
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Type datatypes.JSON `gorm:"column:type;type:text;serializer:json" json:"type,omitempty"`
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}
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func (s *FhirSpecimen) GetSearchParameters() map[string]string {
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searchParameters := map[string]string{
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"accession": "token",
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"bodysite": "token",
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"collected": "date",
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"collector": "reference",
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"container": "token",
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"containerId": "token",
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"id": "keyword",
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"identifier": "token",
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"language": "token",
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"metaLastUpdated": "date",
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"metaProfile": "reference",
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"metaTag": "token",
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"metaVersionId": "keyword",
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"parent": "reference",
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"sort_date": "date",
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"source_id": "keyword",
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"source_resource_id": "keyword",
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"source_resource_type": "keyword",
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"source_uri": "keyword",
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"status": "token",
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"subject": "reference",
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"text": "keyword",
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"type": "special",
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}
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return searchParameters
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}
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func (s *FhirSpecimen) PopulateAndExtractSearchParameters(resourceRaw json.RawMessage) error {
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s.ResourceRaw = datatypes.JSON(resourceRaw)
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// unmarshal the raw resource (bytes) into a map
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var resourceRawMap map[string]interface{}
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err := json.Unmarshal(resourceRaw, &resourceRawMap)
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if err != nil {
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return err
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}
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if len(fhirPathJs) == 0 {
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return fmt.Errorf("fhirPathJs script is empty")
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}
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vm := goja.New()
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// setup the global window object
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vm.Set("window", vm.NewObject())
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// set the global FHIR Resource object
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vm.Set("fhirResource", resourceRawMap)
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// compile the fhirpath library
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fhirPathJsProgram, err := goja.Compile("fhirpath.min.js", fhirPathJs, true)
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if err != nil {
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return err
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}
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// compile the searchParametersExtractor library
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searchParametersExtractorJsProgram, err := goja.Compile("searchParameterExtractor.js", searchParameterExtractorJs, true)
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if err != nil {
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return err
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}
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// add the fhirpath library in the goja vm
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_, err = vm.RunProgram(fhirPathJsProgram)
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if err != nil {
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return err
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}
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// add the searchParametersExtractor library in the goja vm
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_, err = vm.RunProgram(searchParametersExtractorJsProgram)
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if err != nil {
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return err
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}
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// execute the fhirpath expression for each search parameter
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// extracting Accession
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accessionResult, err := vm.RunString("extractTokenSearchParameters(fhirResource, 'Specimen.accessionIdentifier')")
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if err == nil && accessionResult.String() != "undefined" {
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s.Accession = []byte(accessionResult.String())
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}
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// extracting Bodysite
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bodysiteResult, err := vm.RunString("extractTokenSearchParameters(fhirResource, 'Specimen.collection.bodySite')")
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if err == nil && bodysiteResult.String() != "undefined" {
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s.Bodysite = []byte(bodysiteResult.String())
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}
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// extracting Collected
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collectedResult, err := vm.RunString("extractDateSearchParameters(fhirResource, 'Specimen.collection.collectedDateTime | Specimen.collection.collectedPeriod')")
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if err == nil && collectedResult.String() != "undefined" {
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t, err := time.Parse(time.RFC3339, collectedResult.String())
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if err == nil {
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s.Collected = &t
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} else if err != nil {
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d, err := time.Parse("2006-01-02", collectedResult.String())
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if err == nil {
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s.Collected = &d
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}
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}
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}
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// extracting Collector
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collectorResult, err := vm.RunString("extractReferenceSearchParameters(fhirResource, 'Specimen.collection.collector')")
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if err == nil && collectorResult.String() != "undefined" {
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s.Collector = []byte(collectorResult.String())
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}
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// extracting Container
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containerResult, err := vm.RunString("extractTokenSearchParameters(fhirResource, 'Specimen.container.type')")
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if err == nil && containerResult.String() != "undefined" {
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s.Container = []byte(containerResult.String())
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}
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// extracting ContainerId
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containerIdResult, err := vm.RunString("extractTokenSearchParameters(fhirResource, 'Specimen.container.identifier')")
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if err == nil && containerIdResult.String() != "undefined" {
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s.ContainerId = []byte(containerIdResult.String())
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}
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// extracting Identifier
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identifierResult, err := vm.RunString("extractTokenSearchParameters(fhirResource, 'Specimen.identifier')")
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if err == nil && identifierResult.String() != "undefined" {
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s.Identifier = []byte(identifierResult.String())
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}
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// extracting Language
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languageResult, err := vm.RunString("extractTokenSearchParameters(fhirResource, 'language')")
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if err == nil && languageResult.String() != "undefined" {
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s.Language = []byte(languageResult.String())
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}
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// extracting MetaLastUpdated
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metaLastUpdatedResult, err := vm.RunString("extractDateSearchParameters(fhirResource, 'meta.lastUpdated')")
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if err == nil && metaLastUpdatedResult.String() != "undefined" {
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t, err := time.Parse(time.RFC3339, metaLastUpdatedResult.String())
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if err == nil {
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s.MetaLastUpdated = &t
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} else if err != nil {
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d, err := time.Parse("2006-01-02", metaLastUpdatedResult.String())
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if err == nil {
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s.MetaLastUpdated = &d
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}
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}
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}
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// extracting MetaProfile
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metaProfileResult, err := vm.RunString("extractReferenceSearchParameters(fhirResource, 'meta.profile')")
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if err == nil && metaProfileResult.String() != "undefined" {
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s.MetaProfile = []byte(metaProfileResult.String())
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}
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// extracting MetaTag
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metaTagResult, err := vm.RunString("extractTokenSearchParameters(fhirResource, 'meta.tag')")
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if err == nil && metaTagResult.String() != "undefined" {
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s.MetaTag = []byte(metaTagResult.String())
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}
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// extracting MetaVersionId
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metaVersionIdResult, err := vm.RunString("extractSimpleSearchParameters(fhirResource, 'meta.versionId')")
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if err == nil && metaVersionIdResult.String() != "undefined" {
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s.MetaVersionId = metaVersionIdResult.String()
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}
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// extracting Parent
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parentResult, err := vm.RunString("extractReferenceSearchParameters(fhirResource, 'Specimen.parent')")
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if err == nil && parentResult.String() != "undefined" {
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s.Parent = []byte(parentResult.String())
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}
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// extracting Status
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statusResult, err := vm.RunString("extractTokenSearchParameters(fhirResource, 'Specimen.status')")
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if err == nil && statusResult.String() != "undefined" {
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s.Status = []byte(statusResult.String())
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}
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// extracting Subject
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subjectResult, err := vm.RunString("extractReferenceSearchParameters(fhirResource, 'Specimen.subject')")
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if err == nil && subjectResult.String() != "undefined" {
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s.Subject = []byte(subjectResult.String())
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}
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// extracting Text
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textResult, err := vm.RunString("extractSimpleSearchParameters(fhirResource, 'text')")
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if err == nil && textResult.String() != "undefined" {
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s.Text = textResult.String()
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}
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return nil
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}
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// TableName overrides the table name from fhir_observations (pluralized) to `fhir_observation`. https://gorm.io/docs/conventions.html#TableName
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func (s *FhirSpecimen) TableName() string {
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return "fhir_specimen"
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}
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