503 lines
18 KiB
Go
503 lines
18 KiB
Go
// THIS FILE IS GENERATED BY https://github.com/fastenhealth/fasten-onprem/blob/main/backend/pkg/models/database/generate.go
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// PLEASE DO NOT EDIT BY HAND
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package database
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import (
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"encoding/json"
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"fmt"
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goja "github.com/dop251/goja"
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models "github.com/fastenhealth/fastenhealth-onprem/backend/pkg/models"
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datatypes "gorm.io/datatypes"
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"time"
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)
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type FhirSpecimen struct {
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models.ResourceBase
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// The accession number associated with the specimen
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// https://hl7.org/fhir/r4/search.html#token
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Accession datatypes.JSON `gorm:"column:accession;type:text;serializer:json" json:"accession,omitempty"`
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// The code for the body site from where the specimen originated
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// https://hl7.org/fhir/r4/search.html#token
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Bodysite datatypes.JSON `gorm:"column:bodysite;type:text;serializer:json" json:"bodysite,omitempty"`
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// The date the specimen was collected
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// https://hl7.org/fhir/r4/search.html#date
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Collected time.Time `gorm:"column:collected;type:datetime" json:"collected,omitempty"`
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// Who collected the specimen
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// https://hl7.org/fhir/r4/search.html#reference
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Collector datatypes.JSON `gorm:"column:collector;type:text;serializer:json" json:"collector,omitempty"`
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// The kind of specimen container
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// https://hl7.org/fhir/r4/search.html#token
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Container datatypes.JSON `gorm:"column:container;type:text;serializer:json" json:"container,omitempty"`
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// The unique identifier associated with the specimen container
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// https://hl7.org/fhir/r4/search.html#token
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ContainerId datatypes.JSON `gorm:"column:containerId;type:text;serializer:json" json:"containerId,omitempty"`
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// The unique identifier associated with the specimen
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// https://hl7.org/fhir/r4/search.html#token
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Identifier datatypes.JSON `gorm:"column:identifier;type:text;serializer:json" json:"identifier,omitempty"`
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// Language of the resource content
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// https://hl7.org/fhir/r4/search.html#token
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Language datatypes.JSON `gorm:"column:language;type:text;serializer:json" json:"language,omitempty"`
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// When the resource version last changed
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// https://hl7.org/fhir/r4/search.html#date
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LastUpdated time.Time `gorm:"column:lastUpdated;type:datetime" json:"lastUpdated,omitempty"`
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// The parent of the specimen
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// https://hl7.org/fhir/r4/search.html#reference
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Parent datatypes.JSON `gorm:"column:parent;type:text;serializer:json" json:"parent,omitempty"`
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// Profiles this resource claims to conform to
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// https://hl7.org/fhir/r4/search.html#reference
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Profile datatypes.JSON `gorm:"column:profile;type:text;serializer:json" json:"profile,omitempty"`
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// Identifies where the resource comes from
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// https://hl7.org/fhir/r4/search.html#uri
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SourceUri string `gorm:"column:sourceUri;type:text" json:"sourceUri,omitempty"`
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// available | unavailable | unsatisfactory | entered-in-error
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// https://hl7.org/fhir/r4/search.html#token
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Status datatypes.JSON `gorm:"column:status;type:text;serializer:json" json:"status,omitempty"`
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// The subject of the specimen
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// https://hl7.org/fhir/r4/search.html#reference
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Subject datatypes.JSON `gorm:"column:subject;type:text;serializer:json" json:"subject,omitempty"`
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// Tags applied to this resource
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// https://hl7.org/fhir/r4/search.html#token
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Tag datatypes.JSON `gorm:"column:tag;type:text;serializer:json" json:"tag,omitempty"`
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// Text search against the narrative
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// https://hl7.org/fhir/r4/search.html#string
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Text datatypes.JSON `gorm:"column:text;type:text;serializer:json" json:"text,omitempty"`
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// A resource type filter
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// https://hl7.org/fhir/r4/search.html#special
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Type datatypes.JSON `gorm:"column:type;type:text;serializer:json" json:"type,omitempty"`
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}
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func (s *FhirSpecimen) GetSearchParameters() map[string]string {
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searchParameters := map[string]string{
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"accession": "token",
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"bodysite": "token",
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"collected": "date",
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"collector": "reference",
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"container": "token",
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"containerId": "token",
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"identifier": "token",
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"language": "token",
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"lastUpdated": "date",
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"parent": "reference",
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"profile": "reference",
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"sourceUri": "uri",
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"status": "token",
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"subject": "reference",
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"tag": "token",
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"text": "string",
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"type": "special",
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}
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return searchParameters
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}
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func (s *FhirSpecimen) PopulateAndExtractSearchParameters(resourceRaw json.RawMessage) error {
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s.ResourceRaw = datatypes.JSON(resourceRaw)
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// unmarshal the raw resource (bytes) into a map
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var resourceRawMap map[string]interface{}
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err := json.Unmarshal(resourceRaw, &resourceRawMap)
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if err != nil {
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return err
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}
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if len(fhirPathJs) == 0 {
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return fmt.Errorf("fhirPathJs script is empty")
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}
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vm := goja.New()
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// setup the global window object
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vm.Set("window", vm.NewObject())
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// set the global FHIR Resource object
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vm.Set("fhirResource", resourceRawMap)
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// compile the fhirpath library
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fhirPathJsProgram, err := goja.Compile("fhirpath.min.js", fhirPathJs, true)
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if err != nil {
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return err
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}
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// add the fhirpath library in the goja vm
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_, err = vm.RunProgram(fhirPathJsProgram)
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if err != nil {
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return err
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}
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// execute the fhirpath expression for each search parameter
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// extracting Accession
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accessionResult, err := vm.RunString(`
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AccessionResult = window.fhirpath.evaluate(fhirResource, 'Specimen.accessionIdentifier')
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AccessionProcessed = AccessionResult.reduce((accumulator, currentValue) => {
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if (currentValue.coding) {
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//CodeableConcept
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currentValue.coding.map((coding) => {
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accumulator.push({
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"code": coding.code,
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"system": coding.system,
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"text": currentValue.text
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})
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})
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} else if (currentValue.value) {
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//ContactPoint, Identifier
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accumulator.push({
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"code": currentValue.value,
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"system": currentValue.system,
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"text": currentValue.type?.text
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})
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} else if (currentValue.code) {
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//Coding
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accumulator.push({
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"code": currentValue.code,
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"system": currentValue.system,
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"text": currentValue.display
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})
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} else if ((typeof currentValue === 'string') || (typeof currentValue === 'boolean')) {
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//string, boolean
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accumulator.push({
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"code": currentValue,
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})
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}
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return accumulator
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}, [])
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JSON.stringify(AccessionProcessed)
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`)
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if err == nil && accessionResult.String() != "undefined" {
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s.Accession = []byte(accessionResult.String())
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}
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// extracting Bodysite
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bodysiteResult, err := vm.RunString(`
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BodysiteResult = window.fhirpath.evaluate(fhirResource, 'Specimen.collection.bodySite')
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BodysiteProcessed = BodysiteResult.reduce((accumulator, currentValue) => {
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if (currentValue.coding) {
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//CodeableConcept
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currentValue.coding.map((coding) => {
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accumulator.push({
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"code": coding.code,
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"system": coding.system,
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"text": currentValue.text
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})
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})
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} else if (currentValue.value) {
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//ContactPoint, Identifier
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accumulator.push({
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"code": currentValue.value,
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"system": currentValue.system,
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"text": currentValue.type?.text
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})
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} else if (currentValue.code) {
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//Coding
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accumulator.push({
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"code": currentValue.code,
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"system": currentValue.system,
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"text": currentValue.display
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})
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} else if ((typeof currentValue === 'string') || (typeof currentValue === 'boolean')) {
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//string, boolean
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accumulator.push({
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"code": currentValue,
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})
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}
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return accumulator
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}, [])
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JSON.stringify(BodysiteProcessed)
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`)
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if err == nil && bodysiteResult.String() != "undefined" {
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s.Bodysite = []byte(bodysiteResult.String())
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}
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// extracting Collected
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collectedResult, err := vm.RunString("window.fhirpath.evaluate(fhirResource, 'Specimen.collection.collected')[0]")
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if err == nil && collectedResult.String() != "undefined" {
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t, err := time.Parse(time.RFC3339, collectedResult.String())
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if err == nil {
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s.Collected = t
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}
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}
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// extracting Collector
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collectorResult, err := vm.RunString("JSON.stringify(window.fhirpath.evaluate(fhirResource, 'Specimen.collection.collector'))")
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if err == nil && collectorResult.String() != "undefined" {
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s.Collector = []byte(collectorResult.String())
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}
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// extracting Container
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containerResult, err := vm.RunString(`
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ContainerResult = window.fhirpath.evaluate(fhirResource, 'Specimen.container.type')
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ContainerProcessed = ContainerResult.reduce((accumulator, currentValue) => {
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if (currentValue.coding) {
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//CodeableConcept
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currentValue.coding.map((coding) => {
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accumulator.push({
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"code": coding.code,
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"system": coding.system,
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"text": currentValue.text
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})
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})
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} else if (currentValue.value) {
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//ContactPoint, Identifier
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accumulator.push({
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"code": currentValue.value,
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"system": currentValue.system,
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"text": currentValue.type?.text
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})
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} else if (currentValue.code) {
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//Coding
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accumulator.push({
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"code": currentValue.code,
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"system": currentValue.system,
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"text": currentValue.display
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})
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} else if ((typeof currentValue === 'string') || (typeof currentValue === 'boolean')) {
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//string, boolean
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accumulator.push({
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"code": currentValue,
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})
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}
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return accumulator
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}, [])
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JSON.stringify(ContainerProcessed)
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`)
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if err == nil && containerResult.String() != "undefined" {
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s.Container = []byte(containerResult.String())
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}
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// extracting ContainerId
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containerIdResult, err := vm.RunString(`
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ContainerIdResult = window.fhirpath.evaluate(fhirResource, 'Specimen.container.identifier')
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ContainerIdProcessed = ContainerIdResult.reduce((accumulator, currentValue) => {
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if (currentValue.coding) {
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//CodeableConcept
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currentValue.coding.map((coding) => {
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accumulator.push({
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"code": coding.code,
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"system": coding.system,
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"text": currentValue.text
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})
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})
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} else if (currentValue.value) {
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//ContactPoint, Identifier
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accumulator.push({
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"code": currentValue.value,
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"system": currentValue.system,
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"text": currentValue.type?.text
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})
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} else if (currentValue.code) {
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//Coding
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accumulator.push({
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"code": currentValue.code,
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"system": currentValue.system,
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"text": currentValue.display
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})
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} else if ((typeof currentValue === 'string') || (typeof currentValue === 'boolean')) {
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//string, boolean
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accumulator.push({
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"code": currentValue,
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})
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}
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return accumulator
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}, [])
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JSON.stringify(ContainerIdProcessed)
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`)
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if err == nil && containerIdResult.String() != "undefined" {
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s.ContainerId = []byte(containerIdResult.String())
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}
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// extracting Identifier
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identifierResult, err := vm.RunString(`
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IdentifierResult = window.fhirpath.evaluate(fhirResource, 'Specimen.identifier')
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IdentifierProcessed = IdentifierResult.reduce((accumulator, currentValue) => {
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if (currentValue.coding) {
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//CodeableConcept
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currentValue.coding.map((coding) => {
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accumulator.push({
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"code": coding.code,
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"system": coding.system,
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"text": currentValue.text
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})
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})
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} else if (currentValue.value) {
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//ContactPoint, Identifier
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accumulator.push({
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"code": currentValue.value,
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"system": currentValue.system,
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"text": currentValue.type?.text
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})
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} else if (currentValue.code) {
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//Coding
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accumulator.push({
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"code": currentValue.code,
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"system": currentValue.system,
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"text": currentValue.display
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})
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} else if ((typeof currentValue === 'string') || (typeof currentValue === 'boolean')) {
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//string, boolean
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accumulator.push({
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"code": currentValue,
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})
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}
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return accumulator
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}, [])
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JSON.stringify(IdentifierProcessed)
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`)
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if err == nil && identifierResult.String() != "undefined" {
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s.Identifier = []byte(identifierResult.String())
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}
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// extracting Language
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languageResult, err := vm.RunString(`
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LanguageResult = window.fhirpath.evaluate(fhirResource, 'Resource.language')
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LanguageProcessed = LanguageResult.reduce((accumulator, currentValue) => {
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if (currentValue.coding) {
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//CodeableConcept
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currentValue.coding.map((coding) => {
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accumulator.push({
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"code": coding.code,
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"system": coding.system,
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"text": currentValue.text
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})
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})
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} else if (currentValue.value) {
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//ContactPoint, Identifier
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accumulator.push({
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"code": currentValue.value,
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"system": currentValue.system,
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"text": currentValue.type?.text
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})
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} else if (currentValue.code) {
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//Coding
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accumulator.push({
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"code": currentValue.code,
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"system": currentValue.system,
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"text": currentValue.display
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})
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} else if ((typeof currentValue === 'string') || (typeof currentValue === 'boolean')) {
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//string, boolean
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accumulator.push({
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"code": currentValue,
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})
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}
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return accumulator
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}, [])
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JSON.stringify(LanguageProcessed)
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`)
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if err == nil && languageResult.String() != "undefined" {
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s.Language = []byte(languageResult.String())
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}
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// extracting LastUpdated
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lastUpdatedResult, err := vm.RunString("window.fhirpath.evaluate(fhirResource, 'Resource.meta.lastUpdated')[0]")
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if err == nil && lastUpdatedResult.String() != "undefined" {
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t, err := time.Parse(time.RFC3339, lastUpdatedResult.String())
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if err == nil {
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s.LastUpdated = t
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}
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}
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// extracting Parent
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parentResult, err := vm.RunString("JSON.stringify(window.fhirpath.evaluate(fhirResource, 'Specimen.parent'))")
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if err == nil && parentResult.String() != "undefined" {
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s.Parent = []byte(parentResult.String())
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}
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// extracting Profile
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profileResult, err := vm.RunString("JSON.stringify(window.fhirpath.evaluate(fhirResource, 'Resource.meta.profile'))")
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if err == nil && profileResult.String() != "undefined" {
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s.Profile = []byte(profileResult.String())
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}
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// extracting SourceUri
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sourceUriResult, err := vm.RunString("window.fhirpath.evaluate(fhirResource, 'Resource.meta.source')[0]")
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if err == nil && sourceUriResult.String() != "undefined" {
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s.SourceUri = sourceUriResult.String()
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}
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// extracting Status
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statusResult, err := vm.RunString(`
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StatusResult = window.fhirpath.evaluate(fhirResource, 'Specimen.status')
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StatusProcessed = StatusResult.reduce((accumulator, currentValue) => {
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if (currentValue.coding) {
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//CodeableConcept
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currentValue.coding.map((coding) => {
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accumulator.push({
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"code": coding.code,
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"system": coding.system,
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"text": currentValue.text
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})
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})
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} else if (currentValue.value) {
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//ContactPoint, Identifier
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accumulator.push({
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"code": currentValue.value,
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"system": currentValue.system,
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"text": currentValue.type?.text
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})
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} else if (currentValue.code) {
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//Coding
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accumulator.push({
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"code": currentValue.code,
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"system": currentValue.system,
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"text": currentValue.display
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})
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} else if ((typeof currentValue === 'string') || (typeof currentValue === 'boolean')) {
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//string, boolean
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accumulator.push({
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"code": currentValue,
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})
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}
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return accumulator
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}, [])
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JSON.stringify(StatusProcessed)
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`)
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if err == nil && statusResult.String() != "undefined" {
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s.Status = []byte(statusResult.String())
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}
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// extracting Subject
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subjectResult, err := vm.RunString("JSON.stringify(window.fhirpath.evaluate(fhirResource, 'Specimen.subject'))")
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if err == nil && subjectResult.String() != "undefined" {
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s.Subject = []byte(subjectResult.String())
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}
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// extracting Tag
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tagResult, err := vm.RunString(`
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TagResult = window.fhirpath.evaluate(fhirResource, 'Resource.meta.tag')
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TagProcessed = TagResult.reduce((accumulator, currentValue) => {
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if (currentValue.coding) {
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//CodeableConcept
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currentValue.coding.map((coding) => {
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accumulator.push({
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"code": coding.code,
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"system": coding.system,
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"text": currentValue.text
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})
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})
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} else if (currentValue.value) {
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//ContactPoint, Identifier
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accumulator.push({
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"code": currentValue.value,
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"system": currentValue.system,
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"text": currentValue.type?.text
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})
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} else if (currentValue.code) {
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//Coding
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accumulator.push({
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"code": currentValue.code,
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"system": currentValue.system,
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"text": currentValue.display
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})
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} else if ((typeof currentValue === 'string') || (typeof currentValue === 'boolean')) {
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//string, boolean
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accumulator.push({
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"code": currentValue,
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})
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}
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return accumulator
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}, [])
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JSON.stringify(TagProcessed)
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`)
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if err == nil && tagResult.String() != "undefined" {
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s.Tag = []byte(tagResult.String())
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}
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return nil
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}
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// TableName overrides the table name from fhir_observations (pluralized) to `fhir_observation`. https://gorm.io/docs/conventions.html#TableName
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func (s *FhirSpecimen) TableName() string {
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return "fhir_specimen"
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}
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