690 lines
25 KiB
Go
690 lines
25 KiB
Go
//go:build exclude
|
|
|
|
//go:generate go run generate.go
|
|
package main
|
|
|
|
import (
|
|
"encoding/json"
|
|
"fmt"
|
|
"github.com/dave/jennifer/jen"
|
|
"github.com/iancoleman/strcase"
|
|
"golang.org/x/exp/slices"
|
|
"io/ioutil"
|
|
"log"
|
|
"sort"
|
|
"strings"
|
|
)
|
|
|
|
type SearchParameter struct {
|
|
Id string `json:"id"`
|
|
Name string `json:"name"`
|
|
Status string `json:"status"`
|
|
Experimental bool `json:"experimental"`
|
|
Description string `json:"description"`
|
|
Code string `json:"code"`
|
|
Base []string `json:"base"`
|
|
Type string `json:"type"`
|
|
XpathUsage string `json:"xpathUsage"`
|
|
Expression string `json:"expression"`
|
|
Target []string `json:"target"`
|
|
}
|
|
|
|
type SearchParameterBundle struct {
|
|
Entry []struct {
|
|
Resource SearchParameter `json:"resource"`
|
|
} `json:"entry"`
|
|
}
|
|
|
|
type DBField struct {
|
|
FieldType string
|
|
Description string
|
|
FHIRPathExpression string
|
|
}
|
|
|
|
var licenseComment = strings.Split(strings.Trim(`
|
|
THIS FILE IS GENERATED BY https://github.com/fastenhealth/fasten-onprem/blob/main/backend/pkg/models/database/generate.go
|
|
PLEASE DO NOT EDIT BY HAND
|
|
`, "\n"), "\n")
|
|
|
|
func main() {
|
|
// Read the search-parameters.json file
|
|
searchParamsData, err := ioutil.ReadFile("search-parameters.json")
|
|
if err != nil {
|
|
log.Fatal(err)
|
|
}
|
|
|
|
// Parse the search-parameters.json file
|
|
var searchParamsBundle SearchParameterBundle
|
|
err = json.Unmarshal(searchParamsData, &searchParamsBundle)
|
|
if err != nil {
|
|
log.Fatal(err)
|
|
}
|
|
|
|
resourceFieldMap := map[string]map[string]DBField{}
|
|
|
|
// Generate Go structs for each resource type
|
|
for _, entry := range searchParamsBundle.Entry {
|
|
if entry.Resource.Status != "active" && entry.Resource.Status != "draft" {
|
|
continue
|
|
}
|
|
if entry.Resource.Type == "composite" || entry.Resource.Type == "special" {
|
|
continue
|
|
}
|
|
if entry.Resource.Name == "patient" {
|
|
//skip Patient, not needed for searching.
|
|
continue
|
|
}
|
|
|
|
camelCaseResourceName := strcase.ToCamel(entry.Resource.Name)
|
|
|
|
//log.Printf("processing %v", entry.Resource.Id)
|
|
for _, resourceName := range entry.Resource.Base {
|
|
|
|
if !slices.Contains(AllowedResources, resourceName) {
|
|
continue
|
|
}
|
|
|
|
fieldMap, ok := resourceFieldMap[resourceName]
|
|
if !ok {
|
|
fieldMap = map[string]DBField{}
|
|
}
|
|
|
|
fieldMap[camelCaseResourceName] = DBField{
|
|
FieldType: entry.Resource.Type,
|
|
Description: entry.Resource.Description,
|
|
FHIRPathExpression: entry.Resource.Expression,
|
|
}
|
|
|
|
resourceFieldMap[resourceName] = fieldMap
|
|
}
|
|
}
|
|
// make sure all "base" resources have a field map
|
|
for _, resourceName := range AllowedResources {
|
|
_, ok := resourceFieldMap[resourceName]
|
|
if !ok {
|
|
resourceFieldMap[resourceName] = map[string]DBField{}
|
|
}
|
|
}
|
|
|
|
//add default fields to all resources
|
|
for resourceName, fieldMap := range resourceFieldMap {
|
|
fieldMap["LastUpdated"] = DBField{
|
|
FieldType: "date",
|
|
Description: "When the resource version last changed",
|
|
FHIRPathExpression: "Resource.meta.lastUpdated",
|
|
}
|
|
fieldMap["Language"] = DBField{
|
|
FieldType: "token",
|
|
Description: "Language of the resource content",
|
|
FHIRPathExpression: "Resource.language",
|
|
}
|
|
fieldMap["Profile"] = DBField{
|
|
FieldType: "reference",
|
|
Description: "Profiles this resource claims to conform to",
|
|
FHIRPathExpression: "Resource.meta.profile",
|
|
}
|
|
fieldMap["Tag"] = DBField{
|
|
FieldType: "token",
|
|
Description: "Tags applied to this resource",
|
|
FHIRPathExpression: "Resource.meta.tag",
|
|
}
|
|
fieldMap["Text"] = DBField{
|
|
FieldType: "string",
|
|
Description: "Text search against the narrative",
|
|
}
|
|
fieldMap["Type"] = DBField{
|
|
FieldType: "special",
|
|
Description: "A resource type filter",
|
|
}
|
|
|
|
resourceFieldMap[resourceName] = fieldMap
|
|
}
|
|
|
|
// create files for each resource type
|
|
for resourceName, fieldMap := range resourceFieldMap {
|
|
|
|
file := jen.NewFile("database")
|
|
for _, line := range licenseComment {
|
|
file.HeaderComment(line)
|
|
}
|
|
|
|
// Generate fields for search parameters. Make sure they are in a sorted order, otherwise the generated code will be different each time.
|
|
keys := make([]string, 0, len(fieldMap))
|
|
for k, _ := range fieldMap {
|
|
keys = append(keys, k)
|
|
}
|
|
|
|
// Generate struct declaration
|
|
structName := "Fhir" + strings.Title(resourceName)
|
|
file.Type().Id(structName).StructFunc(func(g *jen.Group) {
|
|
//Add the OriginBase embedded struct
|
|
g.Qual("github.com/fastenhealth/fasten-onprem/backend/pkg/models", "ResourceBase")
|
|
|
|
sort.Strings(keys)
|
|
for _, fieldName := range keys {
|
|
fieldInfo := fieldMap[fieldName]
|
|
|
|
g.Comment(fieldInfo.Description)
|
|
g.Comment(fmt.Sprintf("https://hl7.org/fhir/r4/search.html#%s", fieldInfo.FieldType))
|
|
golangFieldType := mapFieldType(fieldInfo.FieldType)
|
|
var isPointer bool
|
|
if strings.HasPrefix(golangFieldType, "*") {
|
|
golangFieldType = strings.TrimPrefix(golangFieldType, "*")
|
|
isPointer = true
|
|
}
|
|
|
|
var golangFieldStatement *jen.Statement
|
|
if strings.Contains(golangFieldType, "#") {
|
|
golangFieldTypeParts := strings.Split(golangFieldType, "#")
|
|
if isPointer {
|
|
golangFieldStatement = g.Id(fieldName).Op("*").Add(jen.Qual(golangFieldTypeParts[0], golangFieldTypeParts[1]))
|
|
} else {
|
|
golangFieldStatement = g.Id(fieldName).Add(jen.Qual(golangFieldTypeParts[0], golangFieldTypeParts[1]))
|
|
}
|
|
} else {
|
|
if isPointer {
|
|
golangFieldStatement = g.Id(fieldName).Op("*").Id(golangFieldType)
|
|
} else {
|
|
golangFieldStatement = g.Id(fieldName).Id(golangFieldType)
|
|
}
|
|
}
|
|
golangFieldStatement.Tag(map[string]string{
|
|
"json": fmt.Sprintf("%s,omitempty", strcase.ToLowerCamel(fieldName)),
|
|
"gorm": fmt.Sprintf("column:%s;%s", strcase.ToLowerCamel(fieldName), mapGormType(fieldInfo.FieldType)),
|
|
})
|
|
}
|
|
})
|
|
|
|
//create an instance function that returns a map of all fields and their types
|
|
file.Func().Call(jen.Id("s").Op("*").Id(structName)).Id("GetSearchParameters").Params().Params(jen.Map(jen.String()).String()).BlockFunc(func(g *jen.Group) {
|
|
g.Id("searchParameters").Op(":=").Map(jen.String()).String().Values(jen.DictFunc(func(d jen.Dict) {
|
|
for _, fieldName := range keys {
|
|
fieldInfo := fieldMap[fieldName]
|
|
fieldNameLowerCamel := strcase.ToLowerCamel(fieldName)
|
|
d[jen.Lit(fieldNameLowerCamel)] = jen.Lit(fieldInfo.FieldType)
|
|
}
|
|
|
|
d[jen.Lit("id")] = jen.Lit("keyword")
|
|
d[jen.Lit("source_id")] = jen.Lit("keyword")
|
|
d[jen.Lit("source_uri")] = jen.Lit("keyword")
|
|
d[jen.Lit("source_resource_id")] = jen.Lit("keyword")
|
|
d[jen.Lit("source_resource_type")] = jen.Lit("keyword")
|
|
d[jen.Lit("sort_date")] = jen.Lit("date")
|
|
|
|
}))
|
|
g.Return(jen.Id("searchParameters"))
|
|
})
|
|
|
|
//create an instance function that extracts all search parameters from the raw resource and populates the struct
|
|
file.Func().Call(jen.Id("s").Op("*").Id(structName)).Id("PopulateAndExtractSearchParameters").Params(jen.Id("resourceRaw").Qual("encoding/json", "RawMessage")).Params(jen.Error()).BlockFunc(func(g *jen.Group) {
|
|
//set resourceRaw to ResourceRaw field
|
|
g.Id("s.ResourceRaw").Op("=").Qual("gorm.io/datatypes", "JSON").Call(jen.Id("resourceRaw"))
|
|
|
|
g.Comment("unmarshal the raw resource (bytes) into a map")
|
|
g.Var().Id("resourceRawMap").Map(jen.String()).Interface()
|
|
g.Err().Op(":=").Qual("encoding/json", "Unmarshal").Call(jen.Id("resourceRaw"), jen.Op("&").Id("resourceRawMap"))
|
|
g.If(jen.Err().Op("!=").Nil()).BlockFunc(func(g *jen.Group) {
|
|
g.Return(jen.Err())
|
|
})
|
|
|
|
//check length of fhirPathJs script (may not have been embedded correctly)
|
|
g.If(jen.Len(jen.Id("fhirPathJs")).Op("==").Lit(0)).BlockFunc(func(f *jen.Group) {
|
|
f.Return(jen.Qual("fmt", "Errorf").Call(jen.Lit("fhirPathJs script is empty")))
|
|
})
|
|
|
|
//initialize goja vm
|
|
g.Id("vm").Op(":=").Qual("github.com/dop251/goja", "New").Call()
|
|
g.Comment("setup the global window object")
|
|
g.Id("vm").Dot("Set").Call(jen.Lit("window"), jen.Id("vm").Dot("NewObject").Call())
|
|
|
|
g.Comment("set the global FHIR Resource object")
|
|
g.Id("vm").Dot("Set").Call(jen.Lit("fhirResource"), jen.Id("resourceRawMap"))
|
|
|
|
g.Comment("compile the fhirpath library")
|
|
g.List(jen.Id("fhirPathJsProgram"), jen.Id("err")).Op(":=").Qual("github.com/dop251/goja", "Compile").Call(jen.Lit("fhirpath.min.js"), jen.Id("fhirPathJs"), jen.True())
|
|
g.If(jen.Err().Op("!=").Nil()).BlockFunc(func(e *jen.Group) {
|
|
e.Return(jen.Err())
|
|
})
|
|
|
|
g.Comment("add the fhirpath library in the goja vm")
|
|
g.List(jen.Id("_"), jen.Id("err")).Op("=").Id("vm").Dot("RunProgram").Call(jen.Id("fhirPathJsProgram"))
|
|
g.If(jen.Err().Op("!=").Nil()).BlockFunc(func(e *jen.Group) {
|
|
e.Return(jen.Err())
|
|
})
|
|
|
|
g.Comment("execute the fhirpath expression for each search parameter")
|
|
for _, fieldName := range keys {
|
|
fieldInfo := fieldMap[fieldName]
|
|
//skip any empty fhirpath expressions, we cant extract anything
|
|
if len(fieldInfo.FHIRPathExpression) == 0 {
|
|
continue
|
|
} else {
|
|
//TODO: "Observation.value as CodeableConcept" and other similar expressions do not work with goja in Golang, but do work in Javascript
|
|
// we're unsure why, but we can work around this by removing the " as " part of the expression, and instead use the fully qualified field name:
|
|
// "Observation.valueCodeableConcept" instead of "Observation.value as CodeableConcept"
|
|
// however, we cannot just remove the " As "string, as there are primitive types that start with a lowercase letter, and we need to uppercase the first letter
|
|
// https://www.hl7.org/fhir/R4/datatypes.html#CodeableConcept
|
|
// https://hl7.org/fhir/r4/formats.html#choice
|
|
// this is a very naive implementation, but it works for now
|
|
fieldInfo.FHIRPathExpression = strings.ReplaceAll(fieldInfo.FHIRPathExpression, " as string", " as String")
|
|
fieldInfo.FHIRPathExpression = strings.ReplaceAll(fieldInfo.FHIRPathExpression, ".as(string)", " as String")
|
|
fieldInfo.FHIRPathExpression = strings.ReplaceAll(fieldInfo.FHIRPathExpression, " as time", " as Time")
|
|
fieldInfo.FHIRPathExpression = strings.ReplaceAll(fieldInfo.FHIRPathExpression, ".as(time)", " as Time")
|
|
fieldInfo.FHIRPathExpression = strings.ReplaceAll(fieldInfo.FHIRPathExpression, " as date", " as Date")
|
|
fieldInfo.FHIRPathExpression = strings.ReplaceAll(fieldInfo.FHIRPathExpression, ".as(date)", " as Date")
|
|
fieldInfo.FHIRPathExpression = strings.ReplaceAll(fieldInfo.FHIRPathExpression, " as dateTime", " as DateTime")
|
|
fieldInfo.FHIRPathExpression = strings.ReplaceAll(fieldInfo.FHIRPathExpression, ".as(dateTime)", " as DateTime")
|
|
fieldInfo.FHIRPathExpression = strings.ReplaceAll(fieldInfo.FHIRPathExpression, " as boolean", " as Boolean")
|
|
fieldInfo.FHIRPathExpression = strings.ReplaceAll(fieldInfo.FHIRPathExpression, ".as(boolean)", " as Boolean")
|
|
fieldInfo.FHIRPathExpression = strings.ReplaceAll(fieldInfo.FHIRPathExpression, " as url", " as Url")
|
|
fieldInfo.FHIRPathExpression = strings.ReplaceAll(fieldInfo.FHIRPathExpression, ".as(url)", " as Url")
|
|
fieldInfo.FHIRPathExpression = strings.ReplaceAll(fieldInfo.FHIRPathExpression, " as code", " as Code")
|
|
fieldInfo.FHIRPathExpression = strings.ReplaceAll(fieldInfo.FHIRPathExpression, ".as(code)", " as Code")
|
|
fieldInfo.FHIRPathExpression = strings.ReplaceAll(fieldInfo.FHIRPathExpression, " as integer", " as Integer")
|
|
fieldInfo.FHIRPathExpression = strings.ReplaceAll(fieldInfo.FHIRPathExpression, ".as(integer)", " as Integer")
|
|
fieldInfo.FHIRPathExpression = strings.ReplaceAll(fieldInfo.FHIRPathExpression, " as uri", " as Uri")
|
|
fieldInfo.FHIRPathExpression = strings.ReplaceAll(fieldInfo.FHIRPathExpression, ".as(uri)", " as Uri")
|
|
fieldInfo.FHIRPathExpression = strings.ReplaceAll(fieldInfo.FHIRPathExpression, " as decimal", " as Decimal")
|
|
fieldInfo.FHIRPathExpression = strings.ReplaceAll(fieldInfo.FHIRPathExpression, ".as(decimal)", " as Decimal")
|
|
fieldInfo.FHIRPathExpression = strings.ReplaceAll(fieldInfo.FHIRPathExpression, ".as(Age)", " as Age")
|
|
fieldInfo.FHIRPathExpression = strings.ReplaceAll(fieldInfo.FHIRPathExpression, ".as(Period)", " as Period")
|
|
fieldInfo.FHIRPathExpression = strings.ReplaceAll(fieldInfo.FHIRPathExpression, ".as(Range)", " as Range")
|
|
|
|
//remove all " as " from the fhirpath expression, this does not work correctly with goja or otto
|
|
fieldInfo.FHIRPathExpression = strings.ReplaceAll(fieldInfo.FHIRPathExpression, " as ", "")
|
|
//remove `Resource.` prefix from resource expression
|
|
fieldInfo.FHIRPathExpression = strings.ReplaceAll(fieldInfo.FHIRPathExpression, "Resource.", "")
|
|
}
|
|
|
|
g.Comment(fmt.Sprintf("extracting %s", fieldName))
|
|
fieldNameVar := fmt.Sprintf("%sResult", strcase.ToLowerCamel(fieldName))
|
|
g.List(jen.Id(fieldNameVar), jen.Id("err")).Op(":=").Id("vm").Dot("RunString").CallFunc(func(r *jen.Group) {
|
|
|
|
script := fmt.Sprintf("window.fhirpath.evaluate(fhirResource, '%s')", fieldInfo.FHIRPathExpression)
|
|
|
|
if fieldInfo.FieldType == "string" {
|
|
//strings are unusual in that they can contain HumanName and Address types, which are not actually simple types
|
|
//we need to do some additional processing,
|
|
r.Op("`").Id(fmt.Sprintf(`
|
|
%sResult = %s
|
|
%sProcessed = %sResult.reduce((accumulator, currentValue) => {
|
|
if (typeof currentValue === 'string') {
|
|
//basic string
|
|
accumulator.push(currentValue)
|
|
} else if (currentValue.family || currentValue.given) {
|
|
//HumanName http://hl7.org/fhir/R4/datatypes.html#HumanName
|
|
var humanNameParts = []
|
|
if (currentValue.prefix) {
|
|
humanNameParts = humanNameParts.concat(currentValue.prefix)
|
|
}
|
|
if (currentValue.given) {
|
|
humanNameParts = humanNameParts.concat(currentValue.given)
|
|
}
|
|
if (currentValue.family) {
|
|
humanNameParts.push(currentValue.family)
|
|
}
|
|
if (currentValue.suffix) {
|
|
humanNameParts = humanNameParts.concat(currentValue.suffix)
|
|
}
|
|
accumulator.push(humanNameParts.join(" "))
|
|
} else if (currentValue.city || currentValue.state || currentValue.country || currentValue.postalCode) {
|
|
//Address http://hl7.org/fhir/R4/datatypes.html#Address
|
|
var addressParts = []
|
|
if (currentValue.line) {
|
|
addressParts = addressParts.concat(currentValue.line)
|
|
}
|
|
if (currentValue.city) {
|
|
addressParts.push(currentValue.city)
|
|
}
|
|
if (currentValue.state) {
|
|
addressParts.push(currentValue.state)
|
|
}
|
|
if (currentValue.postalCode) {
|
|
addressParts.push(currentValue.postalCode)
|
|
}
|
|
if (currentValue.country) {
|
|
addressParts.push(currentValue.country)
|
|
}
|
|
accumulator.push(addressParts.join(" "))
|
|
} else {
|
|
//string, boolean
|
|
accumulator.push(currentValue)
|
|
}
|
|
return accumulator
|
|
}, [])
|
|
|
|
if(%sProcessed.length == 0) {
|
|
"undefined"
|
|
}
|
|
else {
|
|
JSON.stringify(%sProcessed)
|
|
}
|
|
`, fieldName, script, fieldName, fieldName, fieldName, fieldName)).Op("`")
|
|
|
|
} else if isSimpleFieldType(fieldInfo.FieldType) {
|
|
//TODO: we may end up losing some information here, as we are only returning the first element of the array
|
|
script += "[0]"
|
|
//"Don't JSON.stringfy simple types"
|
|
r.Lit(script)
|
|
} else if fieldInfo.FieldType == "token" {
|
|
r.Op("`").Id(fmt.Sprintf(`
|
|
%sResult = %s
|
|
%sProcessed = %sResult.reduce((accumulator, currentValue) => {
|
|
if (currentValue.coding) {
|
|
//CodeableConcept
|
|
currentValue.coding.map((coding) => {
|
|
accumulator.push({
|
|
"code": coding.code,
|
|
"system": coding.system,
|
|
"text": currentValue.text
|
|
})
|
|
})
|
|
} else if (currentValue.value) {
|
|
//ContactPoint, Identifier
|
|
accumulator.push({
|
|
"code": currentValue.value,
|
|
"system": currentValue.system,
|
|
"text": currentValue.type?.text
|
|
})
|
|
} else if (currentValue.code) {
|
|
//Coding
|
|
accumulator.push({
|
|
"code": currentValue.code,
|
|
"system": currentValue.system,
|
|
"text": currentValue.display
|
|
})
|
|
} else if ((typeof currentValue === 'string') || (typeof currentValue === 'boolean')) {
|
|
//string, boolean
|
|
accumulator.push({
|
|
"code": currentValue,
|
|
})
|
|
}
|
|
return accumulator
|
|
}, [])
|
|
|
|
|
|
if(%sProcessed.length == 0) {
|
|
"undefined"
|
|
}
|
|
else {
|
|
JSON.stringify(%sProcessed)
|
|
}
|
|
`, fieldName, script, fieldName, fieldName, fieldName, fieldName)).Op("`")
|
|
} else if fieldInfo.FieldType == "reference" {
|
|
r.Op("`").Id(fmt.Sprintf(`
|
|
%sResult = %s
|
|
|
|
if(%sResult.length == 0) {
|
|
"undefined"
|
|
}
|
|
else {
|
|
JSON.stringify(%sResult)
|
|
}
|
|
`, fieldName, script, fieldName, fieldName)).Op("`")
|
|
|
|
} else {
|
|
r.Lit(fmt.Sprintf(`JSON.stringify(%s)`, script))
|
|
}
|
|
})
|
|
g.If(jen.Err().Op("==").Nil().Op("&&").Id(fieldNameVar).Dot("String").Call().Op("!=").Lit("undefined")).BlockFunc(func(i *jen.Group) {
|
|
switch fieldInfo.FieldType {
|
|
case "token", "special", "quantity", "string", "reference":
|
|
i.Id("s").Dot(fieldName).Op("=").Index().Byte().Parens(jen.Id(fieldNameVar).Dot("String").Call())
|
|
break
|
|
case "number":
|
|
i.Id("s").Dot(fieldName).Op("=").Id(fieldNameVar).Dot("ToFloat").Call()
|
|
break
|
|
case "date":
|
|
//parse RFC3339 date
|
|
i.List(jen.Id("t"), jen.Id("err")).Op(":=").Qual("time", "Parse").Call(jen.Qual("time", "RFC3339"), jen.Id(fieldNameVar).Dot("String").Call())
|
|
i.If(jen.Err().Op("==").Nil()).BlockFunc(func(e *jen.Group) {
|
|
e.Id("s").Dot(fieldName).Op("=").Op("&").Id("t")
|
|
}).Else().If(jen.Err().Op("!=").Nil()).BlockFunc(func(e *jen.Group) {
|
|
//parse date only
|
|
e.List(jen.Id("d"), jen.Id("err")).Op(":=").Qual("time", "Parse").Call(jen.Lit("2006-01-02"), jen.Id(fieldNameVar).Dot("String").Call())
|
|
e.If(jen.Err().Op("==").Nil()).BlockFunc(func(f *jen.Group) {
|
|
f.Id("s").Dot(fieldName).Op("=").Op("&").Id("d")
|
|
})
|
|
})
|
|
case "uri":
|
|
i.Id("s").Dot(fieldName).Op("=").Id(fieldNameVar).Dot("String").Call()
|
|
break
|
|
default:
|
|
i.Id("s").Dot(fieldName).Op("=").Id(fieldNameVar).Dot("String").Call()
|
|
break
|
|
}
|
|
|
|
})
|
|
|
|
}
|
|
g.Return(jen.Nil())
|
|
|
|
})
|
|
|
|
file.Comment("TableName overrides the table name from fhir_observations (pluralized) to `fhir_observation`. https://gorm.io/docs/conventions.html#TableName")
|
|
file.Func().Call(jen.Id("s").Op("*").Id(structName)).Id("TableName").Params().Params(jen.String()).BlockFunc(func(g *jen.Group) {
|
|
g.Return(jen.Lit(strcase.ToSnake(structName)))
|
|
})
|
|
|
|
// Save the generated Go code to a file
|
|
filename := fmt.Sprintf("%s.go", strcase.ToSnake(structName))
|
|
fmt.Printf("Generated Go struct for %s: %s\n", structName, filename)
|
|
err = file.Save(filename)
|
|
if err != nil {
|
|
log.Fatal(err)
|
|
}
|
|
|
|
}
|
|
|
|
bytes, err := json.MarshalIndent(resourceFieldMap["Observation"], "", " ")
|
|
log.Printf("%s, %v", string(bytes), err)
|
|
|
|
utilsFile := jen.NewFile("database")
|
|
|
|
// Generate go embed code for the fhirpath.js file
|
|
//utilsFile.ImportName("embed", "")
|
|
utilsFile.Anon("embed")
|
|
utilsFile.Comment("//go:embed fhirpath.min.js")
|
|
utilsFile.Var().Id("fhirPathJs").String()
|
|
|
|
utilsFile.Comment("Generates all tables in the database associated with these models")
|
|
utilsFile.Func().Id("Migrate").Params(
|
|
jen.Id("gormClient").Op("*").Qual("gorm.io/gorm", "DB"),
|
|
).Params(jen.Error()).BlockFunc(func(g *jen.Group) {
|
|
|
|
/*
|
|
err := sr.GormClient.AutoMigrate(
|
|
&models.User{},
|
|
&models.SourceCredential{},
|
|
&models.ResourceFhir{},
|
|
&models.Glossary{},
|
|
)
|
|
if err != nil {
|
|
return fmt.Errorf("Failed to automigrate! - %v", err)
|
|
}
|
|
return nil
|
|
*/
|
|
g.Id("err").Op(":=").Id("gormClient").Dot("AutoMigrate").CallFunc(func(g *jen.Group) {
|
|
for _, resourceName := range AllowedResources {
|
|
g.Op("&").Id("Fhir" + resourceName).Values()
|
|
}
|
|
})
|
|
|
|
g.If(jen.Id("err").Op("!=").Nil()).Values(jen.Return(jen.Id("err")))
|
|
g.Return(jen.Nil())
|
|
})
|
|
|
|
//A function which returns a the corresponding FhirResource when provided the FhirResource type string
|
|
//uses a switch statement to return the correct type
|
|
utilsFile.Comment("Returns a map of all the resource names to their corresponding go struct")
|
|
utilsFile.Func().Id("NewFhirResourceModelByType").Params(jen.Id("resourceType").String()).Params(jen.Id("IFhirResourceModel"), jen.Error()).BlockFunc(func(g *jen.Group) {
|
|
g.Switch(jen.Id("resourceType")).BlockFunc(func(s *jen.Group) {
|
|
for _, resourceName := range AllowedResources {
|
|
s.Case(jen.Lit(resourceName)).BlockFunc(func(c *jen.Group) {
|
|
c.Return(jen.Op("&").Id("Fhir"+resourceName).Values(), jen.Nil())
|
|
})
|
|
}
|
|
s.Default().BlockFunc(func(d *jen.Group) {
|
|
d.Return(jen.Nil(), jen.Qual("fmt", "Errorf").Call(jen.Lit("Invalid resource type for model: %s"), jen.Id("resourceType")))
|
|
})
|
|
})
|
|
})
|
|
|
|
//A function which returns the GORM table name for a FHIRResource when provided the FhirResource type string
|
|
//uses a switch statement to return the correct type
|
|
utilsFile.Comment("Returns the GORM table name for a FHIRResource when provided the FhirResource type string")
|
|
utilsFile.Func().Id("GetTableNameByResourceType").Params(jen.Id("resourceType").String()).Params(jen.String(), jen.Error()).BlockFunc(func(g *jen.Group) {
|
|
g.Switch(jen.Id("resourceType")).BlockFunc(func(s *jen.Group) {
|
|
for _, resourceName := range AllowedResources {
|
|
s.Case(jen.Lit(resourceName)).BlockFunc(func(c *jen.Group) {
|
|
c.Return(jen.Lit(strcase.ToSnake("Fhir"+resourceName)), jen.Nil())
|
|
})
|
|
}
|
|
s.Default().BlockFunc(func(d *jen.Group) {
|
|
d.Return(jen.Lit(""), jen.Qual("fmt", "Errorf").Call(jen.Lit("Invalid resource type for table name: %s"), jen.Id("resourceType")))
|
|
})
|
|
})
|
|
})
|
|
|
|
//A function which returns all allowed resource types
|
|
utilsFile.Comment("Returns a slice of all allowed resource types")
|
|
utilsFile.Func().Id("GetAllowedResourceTypes").Params().Params(jen.Index().String()).BlockFunc(func(g *jen.Group) {
|
|
g.Return(jen.Index().String().ValuesFunc(func(g *jen.Group) {
|
|
for _, resourceName := range AllowedResources {
|
|
g.Lit(resourceName)
|
|
}
|
|
}))
|
|
})
|
|
|
|
// Save the generated Go code to a file
|
|
err = utilsFile.Save("utils.go")
|
|
if err != nil {
|
|
log.Fatal(err)
|
|
}
|
|
|
|
}
|
|
|
|
// TODO: should we do this, or allow all resources instead of just USCore?
|
|
// The dataabase would be full of empty data, but we'd be more flexible & future-proof.. supporting other countries, etc.
|
|
var AllowedResources = []string{
|
|
"Account",
|
|
"AdverseEvent",
|
|
"AllergyIntolerance",
|
|
"Appointment",
|
|
"Binary",
|
|
"CarePlan",
|
|
"CareTeam",
|
|
"Claim",
|
|
"ClaimResponse",
|
|
"Composition",
|
|
"Condition",
|
|
"Consent",
|
|
"Coverage",
|
|
"CoverageEligibilityRequest",
|
|
"CoverageEligibilityResponse",
|
|
"Device",
|
|
"DeviceRequest",
|
|
"DiagnosticReport",
|
|
"DocumentManifest",
|
|
"DocumentReference",
|
|
"Encounter",
|
|
"Endpoint",
|
|
"EnrollmentRequest",
|
|
"EnrollmentResponse",
|
|
"ExplanationOfBenefit",
|
|
"FamilyMemberHistory",
|
|
"Goal",
|
|
"ImagingStudy",
|
|
"Immunization",
|
|
"InsurancePlan",
|
|
"Location",
|
|
"Media",
|
|
"Medication",
|
|
"MedicationAdministration",
|
|
"MedicationDispense",
|
|
"MedicationRequest",
|
|
"MedicationStatement",
|
|
"NutritionOrder",
|
|
"Observation",
|
|
"Organization",
|
|
"OrganizationAffiliation",
|
|
"Patient",
|
|
"Person",
|
|
"Practitioner",
|
|
"PractitionerRole",
|
|
"Procedure",
|
|
"Provenance",
|
|
"Questionnaire",
|
|
"QuestionnaireResponse",
|
|
"RelatedPerson",
|
|
"Schedule",
|
|
"ServiceRequest",
|
|
"Slot",
|
|
"Specimen",
|
|
"VisionPrescription",
|
|
}
|
|
|
|
// simple field types are not json encoded in the DB and are always single values (not arrays)
|
|
func isSimpleFieldType(fieldType string) bool {
|
|
switch fieldType {
|
|
case "number", "uri", "date":
|
|
return true
|
|
case "token", "reference", "special", "quantity", "string":
|
|
return false
|
|
default:
|
|
return true
|
|
}
|
|
return true
|
|
}
|
|
|
|
// https://hl7.org/fhir/search.html#token
|
|
// https://hl7.org/fhir/r4/valueset-search-param-type.html
|
|
func mapFieldType(fieldType string) string {
|
|
switch fieldType {
|
|
case "number":
|
|
return "float64"
|
|
case "token":
|
|
return "gorm.io/datatypes#JSON"
|
|
case "reference":
|
|
return "gorm.io/datatypes#JSON"
|
|
case "date":
|
|
return "*time#Time"
|
|
case "string":
|
|
return "gorm.io/datatypes#JSON"
|
|
case "uri":
|
|
return "string"
|
|
case "special":
|
|
return "gorm.io/datatypes#JSON"
|
|
case "quantity":
|
|
return "gorm.io/datatypes#JSON"
|
|
default:
|
|
return "string"
|
|
}
|
|
}
|
|
|
|
// https://www.sqlite.org/datatype3.html
|
|
func mapGormType(fieldType string) string {
|
|
// gorm:"type:text;serializer:json"
|
|
|
|
switch fieldType {
|
|
case "number":
|
|
return "type:real"
|
|
case "token":
|
|
return "type:text;serializer:json"
|
|
case "reference":
|
|
return "type:text;serializer:json"
|
|
case "date":
|
|
return "type:datetime"
|
|
case "string":
|
|
return "type:text;serializer:json"
|
|
case "uri":
|
|
return "type:text"
|
|
case "special":
|
|
return "type:text;serializer:json"
|
|
case "quantity":
|
|
return "type:text;serializer:json"
|
|
default:
|
|
return "type:text"
|
|
}
|
|
}
|