Commit Graph

87 Commits

Author SHA1 Message Date
Jason Kulatunga 62a89d7999
make sure we correctly extract text narration field from FHIR resources. Convert to Markdown. 2024-02-17 11:13:49 -08:00
Jason Kulatunga f8292c300f
working signup wizard. 2024-02-14 17:42:21 -08:00
Jason Kulatunga c85e829c46
Adding new system settings table. (#409)
* Adding new system settings table.
Adding associated database migration.
Added tests
Fixing tests for user-settings.

* updated migration, make sure default system settings are created.
Added database commands to create and update system settings.
Added generic response wrapper.

* make sure we can get related versions (fasten sources, onprem and desktop) when starting the app.
2024-02-09 09:10:06 -08:00
Jason Kulatunga ac5359c332
better error handling for User.
Adding an endpoint that allows user to create background job errors.
2024-01-21 09:58:56 -08:00
Jason Kulatunga c88751c5b7
make sure lighthouse environment is passed to the source credential. 2024-01-17 13:45:19 -08:00
Jason Kulatunga dec1914b91
adding version, and migrate cli.
adding better migration support.
migrate between legacy source type to brands,portals and endpoints.
2024-01-16 21:13:52 -08:00
Jason Kulatunga d23af018e7
Timeline based Manual Entry form (#330) 2023-12-03 18:40:16 -08:00
Jason Kulatunga 2061684aed
WIP adding medical history timeline view. (#325) 2023-11-23 08:51:01 -08:00
Jason Kulatunga dbd868c796
adding meta prefix to all relevant meta keys. (#323)
* adding meta prefix to all relevant meta keys.
moved extractor functions into reusable script.

* adding comprensive tests and types for extracted data stored in tables.

* update with README.

* using choiceTypePaths to correctly append types to the search parameter queries.

* adding comment or `keyword` types

* better extraction of Date information.

* fix tests.
2023-11-19 11:09:23 -08:00
Jason Kulatunga d37fb12f89
adding tests for condition and encounter. 2023-11-17 17:16:36 -08:00
Akash Sampurnanand Pandey 7c8a118f40
update FhirPatient unit tests for most fields (#301)
Co-authored-by: Jason Kulatunga <jason@thesparktree.com>
2023-11-13 10:43:03 -08:00
Akash Sampurnanand Pandey a71c690241
update FhirObservation unit tests (#303) 2023-11-13 10:37:48 -08:00
Jason Kulatunga bba1dde606
better error messages when dynamic client registration fails. 2023-11-05 10:53:30 -08:00
Akash b212e97d8e formatting stuff 2023-10-21 10:08:51 -05:00
Akash 79a5c20d06 unit test for identifier and telecom for example1 2023-10-21 02:14:24 -05:00
Nicholas Murray d154d9e811 Merge main
Picked up on most recent change with DeleteSource func
2023-10-16 07:49:45 -07:00
Jason Kulatunga a6edb24aa0
move registration code into the sourceCredential.
Added ability to Reconnect/Update source
make sure re-connect function is disabled for manual sources.
2023-10-11 20:43:27 -07:00
Nicholas Murray 83d90cc373 models/database: update generate.go with postgres db model
We need to swap out datetime with timestamptz in order to properly allow for a postgres DB provider
2023-10-10 12:25:52 -07:00
Jason Kulatunga cae3afce72
adding ability to submit support tickets in-app.
added logos to the patient profile menu
added link to fundraising doc in-app
update fontawesome version.

fixes #272
2023-10-09 16:38:17 -07:00
Jason Kulatunga dcabfc8cd9
Background Jobs (#266) 2023-10-08 16:29:26 -07:00
Jason Kulatunga 1fda51074e
finishing pagination for medical history page. 2023-10-03 17:27:08 -07:00
Jason Kulatunga 21dc5ebe92
WIP paginate graph (medical history view) 2023-10-03 17:19:13 -07:00
Jason Kulatunga 01c293bf40
provide mechanism to call functions when doing aggregations.
provide a standardized format for token aggregation ($.system|$.code)
2023-10-02 13:42:41 -07:00
Jason Kulatunga af2344ec00
add sort_date as a DB field that can be queried.
make sure that order_by is automatically desc for date fields.
2023-10-01 19:15:24 -07:00
Jason Kulatunga 6d831f6ee7
make sure we can send limit and offset when querying.
list the diagnostic reports in the dropdown for filtering.
2023-10-01 17:05:55 -07:00
Jason Kulatunga ce8efdb753 making all references to EventBusListeners pointers
adding a keepalive event type.
2023-09-13 13:57:17 -07:00
Jason Kulatunga 9e1c7455d1 moved event bus into its own package.
created models for event bus messaging.
added logger.
added source complete and sync events.
2023-09-10 09:25:15 -07:00
Jason Kulatunga 0a9eb88b1b
fixing module name (fasten-onprem vs fastenhealth-onprem) 2023-08-27 17:09:46 -07:00
Jason Kulatunga 9a4dcf9852 adding tests for dashboard settings
fixing database persistence for settings.
using reflection instead of abusing AppConfig for parsing UserSettingsEntries to UserSettings struct.
2023-08-25 08:36:12 -07:00
Jason Kulatunga 31479a4fc4 adding support for user settings (Remote Dashboard Locations) 2023-08-25 08:36:12 -07:00
Jason Kulatunga 3fe72918fd
adding ability to count by wildcard (source_resource_type).
internal fields like `id`, `source_id`, `source_resource_id` and `source_resource_type` are now queryable via keyword type.
2023-08-23 12:24:08 -07:00
Jason Kulatunga 3c30298b7c fixing tests. 2023-08-17 17:19:26 -06:00
Jason Kulatunga 2f292397f7 where possible store the SourceURI with the resource.
requires updated version of Fasten sources (better Binary compatibility)
2023-08-17 17:19:26 -06:00
Jason Kulatunga 6f56fa9c3b working aggregation code.
added tests for sql generation.
2023-08-14 17:23:36 -06:00
Jason Kulatunga 2c5133bef7 adding testing framework for Aggregation code.
WIP.
2023-08-14 17:23:36 -06:00
Jason Kulatunga 495fce5696 starting to work on GroupBy aggregations 2023-08-14 17:23:36 -06:00
Jason Kulatunga 1f113cdf63
make sure reference fields are correctly extracted and stored in the DB. 2023-08-13 15:28:03 -06:00
Jason Kulatunga 4dad809f19
removing Resource. segment of FHIRpath expressions (not supported) 2023-08-13 12:30:39 -06:00
Jason Kulatunga ddbf65080d
fixing Condition onset and abatement extraction. 2023-08-13 12:21:43 -06:00
Jason Kulatunga 410696c26f adding pagination to the explore page. fixes #216
simplified fallback component for table list
2023-08-12 10:27:46 -06:00
Jason Kulatunga cb1dab738d fix backend tests 2023-08-08 21:08:17 -07:00
Jason Kulatunga 28cb91817a
make sure sortTitle and SortDate are correctly set when extracting searchParamters
Failures during searchparameter extraction should not cause the resource to be skipped.
Update searchparameter extraction to correctly handle Time objects
Update searchparameter extraction to default to nil if empty list is returned during extraction.
2023-08-01 20:29:35 -07:00
Jason Kulatunga 94fa479ff8 update the generator script for FhirResource storage. 2023-07-31 18:46:52 -07:00
Jason Kulatunga 0517f9b350 make sure we can handle HumanName and Address type objects (convert to string). 2023-07-31 18:46:52 -07:00
Jason Kulatunga 07d01fc33b
fixing tests. 2023-07-20 22:08:31 -07:00
Jason Kulatunga f1b7e80e13
make sure that we print the error response body if we can.
Added an update source method.
After sync, if sourcecredential access token/refresh token has been updated make sure we store it int he database.
2023-07-20 21:43:37 -07:00
Jason Kulatunga a5b37159c1
- make sure that we can generate offline tokens for Epic providers (using dynamic client registration - https://fhir.epic.com/Documentation?docId=Oauth2&section=Standalone-Oauth2-OfflineAccess-0)
- when SourceCredential is sent to the CreateSource API, we'll check if dynamic client regirstion is enabled. If it is, we'll use this token to register a new client, store the client information, and geneate a new Access Token using the key pair associated with this newly registered client.
- added additional fields to SourceCredential table (registration_endpoint, dynamic_client_registration_mode, dynamic_client_jwks, dynamic_client_id)
- renamed RefreshTokens to SetTokens in SourceCredential model - to have consistent naming
- added IsDynamicClient and RefreshDynamicClientAccessToken methods to SourceCredential Model

fixes #178
2023-07-19 22:45:14 -07:00
Jason Kulatunga 12cfcaee41
make sure that the sourcecredential interface is a pointer reciever. 2023-07-14 19:52:02 -07:00
Jason Kulatunga 50ba91ff93
differentiate error messages
adding 600+ manually downloaded logos, thanks to everyone who contributed!
2023-07-09 21:23:41 -07:00
Jason Kulatunga f0fa05c297
adding new fhir resources. 2023-07-08 17:54:19 -07:00